PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 676737120 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
|
||||||||
Family | NF-YC | ||||||||
Protein Properties | Length: 663aa MW: 73515.5 Da PI: 9.3925 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 51.9 | 1.7e-16 | 571 | 612 | 1 | 39 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmi 39 ql++fw++q ie+++dfknh+lPlarikki+kadedv+m+ 676737120 571 QLQMFWSYQrqeIEQVNDFKNHQLPLARIKKIMKADEDVRMM 612 89*****998899***************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.20.20.80 | 6.5E-185 | 26 | 477 | IPR013781 | Glycoside hydrolase, catalytic domain |
SuperFamily | SSF51445 | 3.06E-169 | 29 | 477 | IPR017853 | Glycoside hydrolase superfamily |
Pfam | PF00232 | 8.7E-148 | 33 | 477 | IPR001360 | Glycoside hydrolase family 1 |
PROSITE pattern | PS00653 | 0 | 39 | 53 | IPR033132 | Glycosyl hydrolases family 1, N-terminal conserved site |
PRINTS | PR00131 | 6.3E-17 | 334 | 348 | IPR001360 | Glycoside hydrolase family 1 |
PRINTS | PR00131 | 6.3E-17 | 409 | 417 | IPR001360 | Glycoside hydrolase family 1 |
PRINTS | PR00131 | 6.3E-17 | 429 | 440 | IPR001360 | Glycoside hydrolase family 1 |
PRINTS | PR00131 | 6.3E-17 | 450 | 467 | IPR001360 | Glycoside hydrolase family 1 |
SuperFamily | SSF47113 | 3.16E-8 | 547 | 611 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 4.5E-10 | 585 | 612 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005975 | Biological Process | carbohydrate metabolic process | ||||
GO:0004553 | Molecular Function | hydrolase activity, hydrolyzing O-glycosyl compounds | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 663 aa Download sequence Send to blast |
MRVIFIFLLV LIVLASNEVV AKKKSPAPKL KRSDFPKDFI FGSATSAYQV EGAAHEDGRG 60 PSIWDTYSEK YPEKIQDGSN GSIADDSYRL YKDDVALMHQ IGFNAYRFSI SWSRILPRGN 120 LKGGINQAGI KYYNKLINEL LSKGIKPFVT IFHWDTPQSL EDAYGGFRGT EIVNDFRNYA 180 DICFKKFGDR VKHWMTLNEP LTVVQQGYAI GAMAPGRCSK FTNPNCTAGD GATEPYIVGH 240 NLLLAHGAAV QLYREKYKAS QNGQVGIALN AGWNLPYTES PEDKLAAARA MAFTFDYFME 300 PLVTGKYPVD MVNNVKGGRL PTFTAKQSNM LKGSYDFIGI NYYSSSYAKA VPCSTTNVTL 360 FTDPCARVTG EREGVLIGPR AASDWLLIYP KGIRDLVLYA KYKFKDPVMY ITENGRDEAS 420 ITGKILLKDS DRIDFYARHL EMVREAIAVG ANVKGFFAWS LLDNFEWANG YTVRFGLKKG 480 KSATSLSTLS TSAPNPFGKK KHVTHPSIIQ IIQSQTSNPR RPFPTPQMDN TTTNHQPPPS 540 AAGISPPPPG TSVSAAGGAS YHHLLQQQQQ QLQMFWSYQR QEIEQVNDFK NHQLPLARIK 600 KIMKADEDVR MMIGRPAMDP SGVYVHQPPS QAWQSVWQTS ATGDDVSYGS GGSNGQGNLD 660 GQV |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ptk_A | 0.0 | 28 | 477 | 27 | 479 | Beta-glucosidase Os4BGlu12 |
3ptk_B | 0.0 | 28 | 477 | 27 | 479 | Beta-glucosidase Os4BGlu12 |
3ptm_A | 0.0 | 28 | 477 | 27 | 479 | Beta-glucosidase Os4BGlu12 |
3ptm_B | 0.0 | 28 | 477 | 27 | 479 | Beta-glucosidase Os4BGlu12 |
3ptq_A | 0.0 | 28 | 477 | 27 | 479 | Beta-glucosidase Os4BGlu12 |
3ptq_B | 0.0 | 28 | 477 | 27 | 479 | Beta-glucosidase Os4BGlu12 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | 676737120 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_018490871.1 | 0.0 | PREDICTED: beta-glucosidase 13-like | ||||
Refseq | XP_018490872.1 | 0.0 | PREDICTED: beta-glucosidase 13-like | ||||
Refseq | XP_018490873.1 | 0.0 | PREDICTED: beta-glucosidase 13-like | ||||
Swissprot | Q9LU02 | 0.0 | BGL13_ARATH; Beta-glucosidase 13 | ||||
TrEMBL | A0A3P6BI37 | 0.0 | A0A3P6BI37_BRAOL; Uncharacterized protein | ||||
STRING | Bo3g112280.1 | 0.0 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G63470.2 | 5e-24 | nuclear factor Y, subunit C4 |
Publications ? help Back to Top | |||
---|---|---|---|
|