PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676737120
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family NF-YC
Protein Properties Length: 663aa    MW: 73515.5 Da    PI: 9.3925
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676737120genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC51.91.7e-16571612139
      NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmi 39 
                ql++fw++q   ie+++dfknh+lPlarikki+kadedv+m+
  676737120 571 QLQMFWSYQrqeIEQVNDFKNHQLPLARIKKIMKADEDVRMM 612
                89*****998899***************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.20.20.806.5E-18526477IPR013781Glycoside hydrolase, catalytic domain
SuperFamilySSF514453.06E-16929477IPR017853Glycoside hydrolase superfamily
PfamPF002328.7E-14833477IPR001360Glycoside hydrolase family 1
PROSITE patternPS0065303953IPR033132Glycosyl hydrolases family 1, N-terminal conserved site
PRINTSPR001316.3E-17334348IPR001360Glycoside hydrolase family 1
PRINTSPR001316.3E-17409417IPR001360Glycoside hydrolase family 1
PRINTSPR001316.3E-17429440IPR001360Glycoside hydrolase family 1
PRINTSPR001316.3E-17450467IPR001360Glycoside hydrolase family 1
SuperFamilySSF471133.16E-8547611IPR009072Histone-fold
Gene3DG3DSA:1.10.20.104.5E-10585612IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005975Biological Processcarbohydrate metabolic process
GO:0004553Molecular Functionhydrolase activity, hydrolyzing O-glycosyl compounds
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 663 aa     Download sequence    Send to blast
MRVIFIFLLV LIVLASNEVV AKKKSPAPKL KRSDFPKDFI FGSATSAYQV EGAAHEDGRG  60
PSIWDTYSEK YPEKIQDGSN GSIADDSYRL YKDDVALMHQ IGFNAYRFSI SWSRILPRGN  120
LKGGINQAGI KYYNKLINEL LSKGIKPFVT IFHWDTPQSL EDAYGGFRGT EIVNDFRNYA  180
DICFKKFGDR VKHWMTLNEP LTVVQQGYAI GAMAPGRCSK FTNPNCTAGD GATEPYIVGH  240
NLLLAHGAAV QLYREKYKAS QNGQVGIALN AGWNLPYTES PEDKLAAARA MAFTFDYFME  300
PLVTGKYPVD MVNNVKGGRL PTFTAKQSNM LKGSYDFIGI NYYSSSYAKA VPCSTTNVTL  360
FTDPCARVTG EREGVLIGPR AASDWLLIYP KGIRDLVLYA KYKFKDPVMY ITENGRDEAS  420
ITGKILLKDS DRIDFYARHL EMVREAIAVG ANVKGFFAWS LLDNFEWANG YTVRFGLKKG  480
KSATSLSTLS TSAPNPFGKK KHVTHPSIIQ IIQSQTSNPR RPFPTPQMDN TTTNHQPPPS  540
AAGISPPPPG TSVSAAGGAS YHHLLQQQQQ QLQMFWSYQR QEIEQVNDFK NHQLPLARIK  600
KIMKADEDVR MMIGRPAMDP SGVYVHQPPS QAWQSVWQTS ATGDDVSYGS GGSNGQGNLD  660
GQV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ptk_A0.02847727479Beta-glucosidase Os4BGlu12
3ptk_B0.02847727479Beta-glucosidase Os4BGlu12
3ptm_A0.02847727479Beta-glucosidase Os4BGlu12
3ptm_B0.02847727479Beta-glucosidase Os4BGlu12
3ptq_A0.02847727479Beta-glucosidase Os4BGlu12
3ptq_B0.02847727479Beta-glucosidase Os4BGlu12
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap676737120
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018490871.10.0PREDICTED: beta-glucosidase 13-like
RefseqXP_018490872.10.0PREDICTED: beta-glucosidase 13-like
RefseqXP_018490873.10.0PREDICTED: beta-glucosidase 13-like
SwissprotQ9LU020.0BGL13_ARATH; Beta-glucosidase 13
TrEMBLA0A3P6BI370.0A0A3P6BI37_BRAOL; Uncharacterized protein
STRINGBo3g112280.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63470.25e-24nuclear factor Y, subunit C4
Publications ? help Back to Top
  1. Xu Z, et al.
    Functional genomic analysis of Arabidopsis thaliana glycoside hydrolase family 1.
    Plant Mol. Biol., 2004. 55(3): p. 343-67
    [PMID:15604686]