PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676736818
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family C2H2
Protein Properties Length: 404aa    MW: 46686.4 Da    PI: 5.9782
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676736818genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.90.00016152175123
                EEETTTTEEESSHHHHHHHHHH.T CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                y C+ Cg+ ++++ +Lk+H +  H
  676736818 152 YICGVCGRKCKTNLDLKKHFKQlH 175
                89*****************98766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.10102.0E-572142IPR029060PIN domain-like
PROSITE profilePS5015710.575152180IPR007087Zinc finger, C2H2
PROSITE patternPS000280154175IPR007087Zinc finger, C2H2
CDDcd061673.61E-10218306No hitNo description
Gene3DG3DSA:3.40.50.10102.0E-5237291IPR029060PIN domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MSLFCNSIET LYPKSYLPQK SHFFSFSVTK SRKPSFLKFP YHRRFPTKSC LKSASSSEID  60
MVRNKEGVFA PKEKKVVVLW DLDNKPPRGQ PYEAATELRR VAEKLGRVVE ISAYANRHAF  120
IHLPHWVVEE RRSRRNLDFA ERKGEVTPVE PYICGVCGRK CKTNLDLKKH FKQLHERERQ  180
KKVNRMKSLK GKKRKKFKER FVSGNDKYNE AARRLLTPKV GYGLEAELRR AGVYVKTVED  240
KPQAADWAVK RQIQHSMTRG IDWLVLVSDD KDFSDMLRKA READLGTVVV SDRDGVLGRQ  300
ADLWVPWSGV ENGEIGEADL MPEKRRRFDE EEEEGEGEFD GGGELFSLSY DEDEREEIRV  360
ESDGFGKFNV SAFSEDEWVD EDEEDDGDFA LSDSDDDSDD ELSF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1191195KKRKK
2322327EKRRRF
Cis-element ? help Back to Top
SourceLink
PlantRegMap676736818
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013683341.10.0uncharacterized protein BNAC03G15730D
RefseqXP_022569221.10.0uncharacterized protein LOC111212087
TrEMBLA0A3P6AW040.0A0A3P6AW04_BRAOL; Uncharacterized protein
STRINGBostr.15774s0347.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM125842429
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52010.10.0C2H2-like zinc finger protein