PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676736732 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | MYB | ||||||||
Protein Properties | Length: 290aa MW: 32928.7 Da PI: 8.4809 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 22.4 | 2.9e-07 | 10 | 37 | 1 | 28 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIa 28 +g WT+eEd ll +++ ++G g W+ ++ 676736732 10 KGTWTAEEDSLLRQCIDRYGEGKWHQVP 37 799*********************9986 PP | |||||||
2 | Myb_DNA-binding | 36.8 | 9.2e-12 | 105 | 150 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ + +E +l ++++k+lG++ W++Ia +++ + t++++k++w+++l 676736732 105 RGKLSSDEVDLVLRLHKLLGNR-WSLIAGRLP-NWTANDVKNYWNTHL 150 78999*****************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 7.9E-7 | 2 | 38 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.0E-12 | 2 | 40 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 9.034 | 5 | 46 | IPR017930 | Myb domain |
SMART | SM00717 | 3.8 | 9 | 101 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-5 | 10 | 37 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.55E-4 | 12 | 36 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.0E-12 | 79 | 102 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.81E-12 | 88 | 154 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 20.013 | 100 | 154 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-17 | 103 | 153 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.5E-12 | 104 | 152 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.0E-10 | 105 | 150 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.09E-8 | 109 | 150 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 290 aa Download sequence Send to blast |
MKVLSKGLRK GTWTAEEDSL LRQCIDRYGE GKWHQVPLRA VISPIINVKV LSIFLKSFDF 60 ENISLNKPAV ETVLFDGHNF ERYDLSFRKS CRLRRLNYLK QSIKRGKLSS DEVDLVLRLH 120 KLLGNRWSLI AGRLPNWTAN DVKNYWNTHL SKNRGQCCKT TIKERNISSS STTRSTPTQK 180 LNILNPRARS FGVNNGCSHL NGLPEVDVMP PCLGFNNFNN ICKNNITCEK DELENKLMDE 240 ETLVVECIME GSQEADAVGP EATPIEKGAT LAFDYEQLRN LLVGETVELV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH12/MYC1, EGL3, or GL3. Promotes the synthesis of phenylpropanoid-derived compounds such as anthocyanins. {ECO:0000269|PubMed:11148285, ECO:0000269|PubMed:15361138}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676736732 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By sucrose, nitrogen deficiency, ethylene, UV light and drought. {ECO:0000269|PubMed:17053893, ECO:0000269|PubMed:9839469}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF062915 | 1e-63 | AF062915.2 Arabidopsis thaliana putative transcription factor (MYB90) mRNA, MYB90-Col allele, complete cds. | |||
GenBank | AF325124 | 1e-63 | AF325124.1 Arabidopsis thaliana production of anthocyanin pigment 2 protein (PAP2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002887035.1 | 1e-102 | transcription factor MYB90 | ||||
Swissprot | Q9ZTC3 | 2e-91 | MYB90_ARATH; Transcription factor MYB90 | ||||
TrEMBL | A0A0D3BCY6 | 1e-102 | A0A0D3BCY6_BRAOL; Uncharacterized protein | ||||
STRING | Bo3g081880.1 | 1e-103 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56650.1 | 7e-84 | production of anthocyanin pigment 1 |