PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676736732
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family MYB
Protein Properties Length: 290aa    MW: 32928.7 Da    PI: 8.4809
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676736732genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.42.9e-071037128
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIa 28
                     +g WT+eEd ll +++ ++G g W+ ++
        676736732 10 KGTWTAEEDSLLRQCIDRYGEGKWHQVP 37
                     799*********************9986 PP

2Myb_DNA-binding36.89.2e-12105150148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+ + +E +l ++++k+lG++ W++Ia +++ + t++++k++w+++l
        676736732 105 RGKLSSDEVDLVLRLHKLLGNR-WSLIAGRLP-NWTANDVKNYWNTHL 150
                      78999*****************.*********.************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.9E-7238IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.0E-12240IPR009057Homeodomain-like
PROSITE profilePS512949.034546IPR017930Myb domain
SMARTSM007173.89101IPR001005SANT/Myb domain
PfamPF002491.2E-51037IPR001005SANT/Myb domain
CDDcd001675.55E-41236No hitNo description
Gene3DG3DSA:1.10.10.604.0E-1279102IPR009057Homeodomain-like
SuperFamilySSF466892.81E-1288154IPR009057Homeodomain-like
PROSITE profilePS5129420.013100154IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.9E-17103153IPR009057Homeodomain-like
SMARTSM007173.5E-12104152IPR001005SANT/Myb domain
PfamPF002492.0E-10105150IPR001005SANT/Myb domain
CDDcd001672.09E-8109150No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MKVLSKGLRK GTWTAEEDSL LRQCIDRYGE GKWHQVPLRA VISPIINVKV LSIFLKSFDF  60
ENISLNKPAV ETVLFDGHNF ERYDLSFRKS CRLRRLNYLK QSIKRGKLSS DEVDLVLRLH  120
KLLGNRWSLI AGRLPNWTAN DVKNYWNTHL SKNRGQCCKT TIKERNISSS STTRSTPTQK  180
LNILNPRARS FGVNNGCSHL NGLPEVDVMP PCLGFNNFNN ICKNNITCEK DELENKLMDE  240
ETLVVECIME GSQEADAVGP EATPIEKGAT LAFDYEQLRN LLVGETVELV
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH12/MYC1, EGL3, or GL3. Promotes the synthesis of phenylpropanoid-derived compounds such as anthocyanins. {ECO:0000269|PubMed:11148285, ECO:0000269|PubMed:15361138}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676736732
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By sucrose, nitrogen deficiency, ethylene, UV light and drought. {ECO:0000269|PubMed:17053893, ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0629151e-63AF062915.2 Arabidopsis thaliana putative transcription factor (MYB90) mRNA, MYB90-Col allele, complete cds.
GenBankAF3251241e-63AF325124.1 Arabidopsis thaliana production of anthocyanin pigment 2 protein (PAP2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002887035.11e-102transcription factor MYB90
SwissprotQ9ZTC32e-91MYB90_ARATH; Transcription factor MYB90
TrEMBLA0A0D3BCY61e-102A0A0D3BCY6_BRAOL; Uncharacterized protein
STRINGBo3g081880.11e-103(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56650.17e-84production of anthocyanin pigment 1
Publications ? help Back to Top
  1. Ilk N,Ding J,Ihnatowicz A,Koornneef M,Reymond M
    Natural variation for anthocyanin accumulation under high-light and low-temperature stress is attributable to the ENHANCER OF AG-4 2 (HUA2) locus in combination with PRODUCTION OF ANTHOCYANIN PIGMENT1 (PAP1) and PAP2.
    New Phytol., 2015. 206(1): p. 422-35
    [PMID:25425527]
  2. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  3. Nemie-Feyissa D,Heidari B,Blaise M,Lillo C
    Analysis of interactions between heterologously produced bHLH and MYB proteins that regulate anthocyanin biosynthesis: quantitative interaction kinetics by Microscale Thermophoresis.
    Phytochemistry, 2015. 111: p. 21-6
    [PMID:25659750]
  4. Bac-Molenaar JA,Fradin EF,Rienstra JA,Vreugdenhil D,Keurentjes JJ
    GWA Mapping of Anthocyanin Accumulation Reveals Balancing Selection of MYB90 in Arabidopsis thaliana.
    PLoS ONE, 2015. 10(11): p. e0143212
    [PMID:26588092]
  5. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]
  6. Li N, et al.
    The heterologous expression of Arabidopsis PAP2 induces anthocyanin accumulation and inhibits plant growth in tomato.
    Funct. Integr. Genomics, 2018. 18(3): p. 341-353
    [PMID:29372433]