PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676736646
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family MYB
Protein Properties Length: 201aa    MW: 23209.3 Da    PI: 9.1909
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676736646genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.83.9e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg W +eEd +l  +v+ +G g+W+ I+r+ g++R +k+c++rw +yl
        676736646 14 RGLWKPEEDMILRSYVETHGEGNWADISRRSGLKRGGKSCRLRWKNYL 61
                     788*****************************99************97 PP
2Myb_DNA-binding50.35.6e-1667112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg ++++E++l+++ +k+lG++ W++Ia +++ gRt++++k++w+++l
        676736646  67 RGGMSPQEQDLIIRMHKLLGNR-WSLIAGRLP-GRTDNEVKNYWNTHL 112
                      6779******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.587961IPR017930Myb domain
SuperFamilySSF466893.44E-2912108IPR009057Homeodomain-like
SMARTSM007173.9E-141363IPR001005SANT/Myb domain
PfamPF002491.7E-141461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.7E-221568IPR009057Homeodomain-like
CDDcd001672.24E-101761No hitNo description
PROSITE profilePS5129424.58462116IPR017930Myb domain
SMARTSM007172.2E-1566114IPR001005SANT/Myb domain
PfamPF002491.8E-1467112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-2369115IPR009057Homeodomain-like
CDDcd001676.52E-1170112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010026Biological Processtrichome differentiation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MEKREEERKS HVKRGLWKPE EDMILRSYVE THGEGNWADI SRRSGLKRGG KSCRLRWKNY  60
LRPNIKRGGM SPQEQDLIIR MHKLLGNRWS LIAGRLPGRT DNEVKNYWNT HLNKKSNSRK  120
QNANESVEAT PCIDKPVMST EVRRSHGEGG EEGTTTTWME ETNCFAYDVG IGSPLPLISH  180
YPDNTLVFDP CFAFTDFFPL L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-231211525127MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activation factor positively regulating trichomes development (PubMed:24803498). Has a function nearly equivalent to that of GL1 and can complement gl1 mutants (PubMed:24803498). {ECO:0000269|PubMed:24803498}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676736646
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin (IAA). {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_680426.11e-127myb domain protein 82
SwissprotQ9LTF71e-128MYB82_ARATH; Transcription factor MYB82
TrEMBLA0A178URQ81e-126A0A178URQ8_ARATH; MYB82
STRINGCagra.0084s0008.1.p1e-127(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52600.11e-118myb domain protein 82