PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676736128 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 233aa MW: 26591.1 Da PI: 9.8597 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 99.1 | 1.7e-31 | 9 | 58 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fs++g+lyey+ 676736128 9 KRIENSTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYA 58 79***********************************************8 PP | |||||||
2 | K-box | 93.8 | 2.9e-31 | 76 | 175 | 3 | 100 |
K-box 3 kssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKn..ellleqieelqkkekelqeenkaLrkklee 100 ++++ s++e +a+++qqe+akL+++i+++q+++R+l+G++L+ Ls+keL+q+e++Lek++++iRskK+ elll++ie+lqk+e el++e +Lr+k++e 676736128 76 NTNTHSVQEINAAYYQQESAKLRQQIQTIQNSNRNLMGDSLSALSVKELKQVENRLEKAISRIRSKKKqhELLLAEIENLQKREIELDNESIYLRTKIAE 175 45556699*********************************************************9862268*************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 7.0E-42 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 34.034 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.35E-33 | 2 | 83 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 8.99E-43 | 2 | 75 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.1E-33 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.4E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.1E-33 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.1E-33 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.2E-22 | 86 | 173 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 13.689 | 87 | 179 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0080155 | Biological Process | regulation of double fertilization forming a zygote and endosperm | ||||
GO:0090376 | Biological Process | seed trichome differentiation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MGRGKIEIKR IENSTNRQVT FCKRRNGLLK KAYELSVLCD AEVALIVFST RGRLYEYANN 60 NIRSTIERYK KASSDNTNTH SVQEINAAYY QQESAKLRQQ IQTIQNSNRN LMGDSLSALS 120 VKELKQVENR LEKAISRIRS KKKQHELLLA EIENLQKREI ELDNESIYLR TKIAEVERFQ 180 QHHHQMVSGN EMTAIEVLAS RNYFAHSIMT AGSGSGAGQG CSYSDPDKKI HLG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tqe_P | 8e-22 | 1 | 85 | 1 | 88 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 8e-22 | 1 | 85 | 1 | 88 | Myocyte-specific enhancer factor 2B |
1tqe_R | 8e-22 | 1 | 85 | 1 | 88 | Myocyte-specific enhancer factor 2B |
1tqe_S | 8e-22 | 1 | 85 | 1 | 88 | Myocyte-specific enhancer factor 2B |
6c9l_A | 8e-22 | 1 | 85 | 1 | 88 | Myocyte-specific enhancer factor 2B |
6c9l_B | 8e-22 | 1 | 85 | 1 | 88 | Myocyte-specific enhancer factor 2B |
6c9l_C | 8e-22 | 1 | 85 | 1 | 88 | Myocyte-specific enhancer factor 2B |
6c9l_D | 8e-22 | 1 | 85 | 1 | 88 | Myocyte-specific enhancer factor 2B |
6c9l_E | 8e-22 | 1 | 85 | 1 | 88 | Myocyte-specific enhancer factor 2B |
6c9l_F | 8e-22 | 1 | 85 | 1 | 88 | Myocyte-specific enhancer factor 2B |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor (Probable). Is required, together with TT16/AGL32 for the maternal control of endothelium formation, which is essential for female gametophyte development and fertilization, and seed formation (PubMed:22176531). {ECO:0000269|PubMed:22176531, ECO:0000305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676736128 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | ATU20182 | 0.0 | U20182.1 Arabidopsis thaliana MADS-box protein AGL11 (AGL11) mRNA, complete cds. | |||
GenBank | AY087201 | 0.0 | AY087201.1 Arabidopsis thaliana clone 32791 mRNA, complete sequence. | |||
GenBank | EU551767 | 0.0 | EU551767.1 Capsella bursa-pastoris SEEDSTICK-like protein (STKb) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009113581.1 | 1e-161 | PREDICTED: agamous-like MADS-box protein AGL11 isoform X1 | ||||
Swissprot | Q38836 | 1e-142 | AGL11_ARATH; Agamous-like MADS-box protein AGL11 | ||||
TrEMBL | A0A3P5Y0I3 | 1e-160 | A0A3P5Y0I3_BRACM; Uncharacterized protein | ||||
TrEMBL | M4F9Y1 | 1e-160 | M4F9Y1_BRARP; Uncharacterized protein | ||||
STRING | Bra037895.1-P | 1e-161 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4994 | 22 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G09960.1 | 1e-144 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
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