PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676736100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | C2H2 | ||||||||
Protein Properties | Length: 517aa MW: 57383.1 Da PI: 6.1705 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 21 | 8.6e-07 | 261 | 282 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C++Cgk F+r nL+ H+r H 676736100 261 FCTICGKGFKRDANLRMHMRGH 282 6*******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.32E-5 | 258 | 285 | No hit | No description |
SMART | SM00355 | 0.0026 | 260 | 282 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 12.03 | 260 | 287 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 7.9E-6 | 261 | 313 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 262 | 282 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 50 | 311 | 344 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 45 | 349 | 371 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010044 | Biological Process | response to aluminum ion | ||||
GO:0010447 | Biological Process | response to acidic pH | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 517 aa Download sequence Send to blast |
METEDDLCHN NWGSSSCSSK LREPVCFTSQ QKWEDASILD YEMGMEEPDL QVFDQMKATS 60 GQDDNNSNNG QANADFLQGV KAQAWDPRTM LSNLSFMEQK IHELQDLVHL IVGRNGQLHG 120 RQDELVAQQQ QQLITTDLTS IIIQLISTAG SLLPSVKHNM STTPGPFTGQ PGSAMFPYPR 180 EANNVASQSQ NNNNNNNRGA VQEFDFPKPI VVDERERESH VVEEHEMKDE DDAEEGENLP 240 PGSYEILQLE KEEILAPHTH FCTICGKGFK RDANLRMHMR GHGDEYKTPA ALAKPNKETV 300 PGSEPMLIKR YSCPFPGCKR NKDHKKFQPL KTILCVKNHY KRTHCDKSFT CSRCHTKKFS 360 VIADLKTHEK HCGKNKWLCS CGTTFSRKDK LFGHISLFQG HTPAIPLEET KPSAGASAQR 420 GSFDCGNNNN AGMVDFNLGS ATTANQETAQ PGFMDGKISF EDSFSPLSFD TCTFGGFHEF 480 PRPMLDDSVS SFQILISSAC GFSPRNGGGG SVSNTSL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Together with STOP2, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:17535918, ECO:0000269|PubMed:18826429, ECO:0000269|PubMed:19321711, ECO:0000269|PubMed:23935008}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00196 | ampDAP | Transfer from AT1G34370 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676736100 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By shock H(+) and Al(3+) treatments. {ECO:0000269|PubMed:17535918}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020867314.1 | 0.0 | protein SENSITIVE TO PROTON RHIZOTOXICITY 1 isoform X1 | ||||
Swissprot | Q9C8N5 | 0.0 | STOP1_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 1 | ||||
TrEMBL | D7KK61 | 0.0 | D7KK61_ARALL; Zinc finger family protein | ||||
STRING | fgenesh2_kg.1__3547__AT1G34370.2 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6977 | 26 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34370.2 | 0.0 | C2H2 family protein |