PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676735596 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | G2-like | ||||||||
Protein Properties | Length: 411aa MW: 46154.6 Da PI: 7.1398 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 100.7 | 9.3e-32 | 84 | 137 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtpeLH +F++ave+LGG+++AtPk +l+lm+vkgL+++hvkSHLQ+YR+ 676735596 84 PRLRWTPELHLCFLQAVERLGGPDRATPKLVLQLMNVKGLSIAHVKSHLQMYRS 137 8****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.1E-30 | 80 | 138 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 13.321 | 80 | 140 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.94E-16 | 81 | 139 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.7E-24 | 84 | 139 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 9.9E-10 | 85 | 136 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 411 aa Download sequence Send to blast |
MRSSSQSSEN SKTCPSNEFK ATTKKEDNKD EEDDEEEENE EERSADQSPS NNSYVEESGS 60 HHHNNDPIKK NGGSVRPYNR SKTPRLRWTP ELHLCFLQAV ERLGGPDRAT PKLVLQLMNV 120 KGLSIAHVKS HLQMYRSKKT DDPNQGDQGF SFEHGAGYTY NLSQLPMLQS FDQRPSTSLG 180 YGSGSWTDHR RQVYRSPWRG LTARDNTRTR QTLFSSQSGE RFHGVSNSTL DDKNKTISFR 240 ISSHEAAHAN NGVGEAVPRI HRSFLEGMKT FNKSWGQGLS SNPNSSTASR PQDHIATTLS 300 SNQRDNPKVA EETENVLKRK RLILSDDCDK SDQDLDLSLS LKVPRTHNNL GDCVLEDEEK 360 EHNDHEDSKG LSLSLSSPSL SKLGRAITKE DQNDHKKRKI SVLASPLDLT L |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 2e-17 | 85 | 139 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 2e-17 | 85 | 139 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 2e-17 | 85 | 139 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 2e-17 | 85 | 139 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 2e-17 | 85 | 139 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 2e-17 | 85 | 139 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 2e-17 | 85 | 139 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 2e-17 | 85 | 139 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 2e-17 | 85 | 139 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 2e-17 | 85 | 139 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 2e-17 | 85 | 139 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 2e-17 | 85 | 139 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00301 | DAP | Transfer from AT2G40260 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676735596 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013634613.1 | 0.0 | PREDICTED: uncharacterized protein LOC106340283 isoform X2 | ||||
TrEMBL | A0A0D3BQA8 | 0.0 | A0A0D3BQA8_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6BI71 | 0.0 | A0A3P6BI71_BRAOL; Uncharacterized protein | ||||
STRING | Bo4g025360.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9359 | 21 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40260.1 | 0.0 | G2-like family protein |