PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676735582 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | bHLH | ||||||||
Protein Properties | Length: 260aa MW: 29026.5 Da PI: 8.2077 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.4 | 1.1e-12 | 68 | 111 | 3 | 51 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYI 51 r+h +E+rRRdriNs ++ Lr+l+P + Kl+Ka+ L +++e + 676735582 68 RSHRLAEKRRRDRINSHLSALRKLVPDS-----DKLDKAALLARVIEEV 111 68*************************8.....7*********999965 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.7E-12 | 64 | 120 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.456 | 65 | 114 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 8.96E-10 | 68 | 113 | No hit | No description |
Pfam | PF00010 | 2.6E-10 | 68 | 111 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 7.3E-13 | 69 | 120 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.3E-10 | 71 | 120 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MENSYDSEAA KWTDSTSPYN MVSWSLLQSD SSDSDLSRFN LGFSSSSSNN FLADELVGGI 60 EKAESLSRSH RLAEKRRRDR INSHLSALRK LVPDSDKLDK AALLARVIEE VKEFKQKAKE 120 SPIFQDLPTE ADEVTVQPET ISNGFESDTT NNRVVIFKAS FCCEDQPESI SEIVRVLTKF 180 QLETIQAQII CVGGRMRINF ILKEKASTAT STTTTSAKAL KQSLCAALNR ITSSSSSSTS 240 SVCRIRSKRQ RWFLSSHYSQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676735582 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by salicylic acid (SA) treatment. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006411274.1 | 1e-137 | transcription factor bHLH51 | ||||
Swissprot | Q9XEF0 | 1e-136 | BH051_ARATH; Transcription factor bHLH51 | ||||
TrEMBL | A0A1J3CQ23 | 1e-138 | A0A1J3CQ23_NOCCA; Transcription factor bHLH51 | ||||
TrEMBL | A0A398A4B2 | 1e-138 | A0A398A4B2_BRACM; Uncharacterized protein | ||||
STRING | XP_006411274.1 | 1e-137 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6806 | 25 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40200.1 | 1e-115 | bHLH family protein |
Publications ? help Back to Top | |||
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