PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 676735524 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
|
||||||||
Family | ARF | ||||||||
Protein Properties | Length: 909aa MW: 100100 Da PI: 6.345 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 75.6 | 5.5e-24 | 127 | 228 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 f+k+lt sd++++g +++p++ ae+ +++++ ++l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F ++++ +l+ 676735524 127 FCKTLTASDTSTHGGFSVPRRAAEKVfppldysQQPPA--QELMARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNDKNQLL 222 99*****************************8544444..48************************************************..7888889* PP EEEE-S CS B3 94 vkvfrk 99 ++++r+ 676735524 223 LGIRRA 228 ***997 PP | |||||||
2 | Auxin_resp | 117.6 | 1e-38 | 253 | 336 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+t+s F+++YnPras+seFv++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+ dldp rW nS+Wrs+k 676735524 253 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGICDLDPARWANSHWRSVK 336 79*********************************9789******************************************985 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.7E-48 | 112 | 256 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.0E-41 | 120 | 242 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.05E-20 | 126 | 227 | No hit | No description |
PROSITE profile | PS50863 | 12.464 | 127 | 229 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.9E-22 | 127 | 228 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.9E-24 | 127 | 229 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 9.2E-34 | 253 | 336 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 2.9E-8 | 758 | 859 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 2.16E-7 | 761 | 845 | No hit | No description |
PROSITE profile | PS51745 | 24.173 | 770 | 854 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 909 aa Download sequence Send to blast |
MRLSTAGFNP QPHEGEKRVL NSELWHACAG PLVSLPPLGS RVVYFPQGHS EQVAASTNKE 60 VDAHIPNYPS LHPQLICQLH NVTMHADVET DEVYAQMTLQ PLNAQEQKDP YLPAELGVPS 120 RQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDYSQ QPPAQELMAR DLHDNEWKFR 180 HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VLFIWNDKNQ LLLGIRRANR PQTVMPSSVL 240 SSDSMHLGLL AAAAHAAATN SRFTIFYNPR ASPSEFVIPL AKYVKAVYHT RVSVGMRFRM 300 LFETEESSVR RYMGTITGIC DLDPARWANS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT 360 TFPMYPSPFP LRLKRPWPPG LPSFHGLKED DMGMGMSSPL MWDRGLQSLN FQGMGVNPWM 420 QPRLDASGLL GMQNDVYQAM AAAALQDMRG IDPAKAAASL LQFQNPSGFS MQSPSLVQPQ 480 MLQQQLSQQQ QQQLSQQQQQ QLSQQQQQQS YLGVPETHQP QSHVQSQSNN LVSQQQQQVV 540 DNHNSSASSA AVVSGMSQFG SVSQSSTSPL QSMTSLCQQQ SFSDTNGGNN PISPLHTLLS 600 NFSQDESSQL LNLTRTNSAM TSSGWPSKRP AVDSSFQHSG NGNNNNTQSV MEQLGQAHTS 660 NVPPNAVSLP PFPGGRECSI EQEGSASDPH SHLLFGVNID SSSLLMPNGM SNLRSIGIEG 720 GDSTTLPFTS SNFNNDFSGN LAMTTPSSCI DESGFLQSSE NLGSENQQSN TFVKVYKSGS 780 FGRSLDISKF SSYHELRSEL ARMFGLEGQL EDPVRSGWQL VFVDRENDVL LLGDDPWPEF 840 VSSVWCIKIL SPQEVQQMGK RGLELLNSAP SSNNVDKLPS NGNCDDFGNR SDPRNLGNGI 900 ASVGGSFNY |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-159 | 16 | 357 | 47 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Regulates both stamen and gynoecium maturation. Promotes jasmonic acid production. Partially redundant with ARF8. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16107481}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | 676735524 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Repressed by miR167. {ECO:0000269|PubMed:17021043}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AF013467 | 0.0 | AF013467.1 Arabidopsis thaliana ARF6 (ARF6) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010478420.1 | 0.0 | PREDICTED: auxin response factor 6 isoform X4 | ||||
Swissprot | Q9ZTX8 | 0.0 | ARFF_ARATH; Auxin response factor 6 | ||||
TrEMBL | V4L254 | 0.0 | V4L254_EUTSA; Auxin response factor | ||||
STRING | AT1G30330.2 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1344 | 28 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G30330.1 | 0.0 | auxin response factor 6 |