PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676735498
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family MYB
Protein Properties Length: 746aa    MW: 82881.7 Da    PI: 8.3644
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676735498genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.61e-16412457147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +g+W++e d  l ++v++lG+++W++Iar ++ gR++k+c++rw + 
        676735498 412 KGPWSPEQDAVLTRLVNKLGPRNWTLIARGIP-GRSGKSCRLRWCNQ 457
                      79******************************.***********985 PP
2Myb_DNA-binding53.26.7e-17464507146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r+++T eEd l+  a++ +G++ W+ Ia+ ++ gRt++++k++w++
        676735498 464 RKPFTDEEDNLIMSAHAVHGNK-WSVIAKLLP-GRTDNSIKNHWNS 507
                      789*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5018110.796146IPR001810F-box domain
SuperFamilySSF813833.53E-11355IPR001810F-box domain
Gene3DG3DSA:1.20.1280.501.3E-8442No hitNo description
PfamPF129372.3E-8442IPR001810F-box domain
SMARTSM002567.0E-9646IPR001810F-box domain
TIGRFAMsTIGR016407.2E-17104293IPR017451F-box associated interaction domain
PROSITE profilePS5129418.913407458IPR017930Myb domain
SuperFamilySSF466891.1E-29409505IPR009057Homeodomain-like
SMARTSM007171.3E-14411460IPR001005SANT/Myb domain
PfamPF002491.8E-15412457IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.2E-24413465IPR009057Homeodomain-like
CDDcd001676.55E-13414456No hitNo description
PROSITE profilePS5129425.907459513IPR017930Myb domain
SMARTSM007171.6E-15463511IPR001005SANT/Myb domain
PfamPF002492.7E-15464507IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.5E-24466512IPR009057Homeodomain-like
CDDcd001672.31E-11466506No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 746 aa     Download sequence    Send to blast
MFSSYLPPEV ILKILSLLPG KTLPKLRLVS KQFNSVISEP YLLRLHHRFA LNSFSILTAV  60
TALRSSLTVE LKLFLFTKPY HEQTQQPITK CFLGDRVRVF SSNHQLLCFV SDKEHFLFDP  120
INQTTLEMPK SSSSCFSSPN VISFGFVAST LQYKIIRFFL PYFPICKFEV LTVHITGSNY  180
KHRLDISTWR SQEQQCPYLL QPYPPVQANG FIYWTTKDVP EIVSFSLEQE KFSVLPPPPC  240
FEDNPNQDFS LCGIRGNLFV INYNPLEPAM EIWMMIGSNG CAWVKTHRIG LKDTLTRYYP  300
SFPIRIHEVQ PDFVLFQGLT NSNIAGVVAV AVAGVCGSGR FAVLNVIKRF LPMNAEILGQ  360
IPAANPYTAF DESSSEDAIN AAVNAELAEL AAAGGGEGDS NGGGGSGRSK AKGPWSPEQD  420
AVLTRLVNKL GPRNWTLIAR GIPGRSGKSC RLRWCNQLDP CLKRKPFTDE EDNLIMSAHA  480
VHGNKWSVIA KLLPGRTDNS IKNHWNSALK RKHADLWNTH QWMSSSSDTV TPCVKETMVR  540
KVSNASSSSS SPKEHSLRQE TNPPPVSTDV LMDGEANKTR EGKCKPGVCR PVARLGAFSV  600
YKPGYMNQHL APCEGPLVQT SRPDSLAGQF LQSLCYEPSI PSKCGHGCCI QPDTTLSSSS  660
VLGPEFVDYE EPSSAALDQE LVSIATDLNN IAWIRSGLNK SYFREVEQSL TADNHFHLEH  720
ARARAKFTGM VNNGIPNHLL RQDLRA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-374125127107B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRequired for male gametophyte (pollen) development. {ECO:0000269|PubMed:22101548}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676735498
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: May be the target of the microRNA (miRNA) MIR393a. {ECO:0000269|PubMed:15258262}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013748036.10.0transcription factor MYB25
SwissprotO041921e-144MYB25_ARATH; Transcription factor MYB25
TrEMBLA0A078G5500.0A0A078G550_BRANA; BnaC04g05500D protein
STRINGBo4g025810.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G39880.11e-133myb domain protein 25
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]