PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676735196

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

GRF

Protein Properties

Length: 425aa MW: 47903.6 Da PI: 9.1519

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676735196	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	70.7	1.8e-22	91	135	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 ++ep rCrRtDGKkW Cs+rvl +k+CErH+hrgr+rsrk +e+ 676735196 91 EPEPTRCRRTDGKKWQCSNRVLLSQKYCERHMHRGRKRSRKLVES 135 69***************************************9987 PP
2	WRC	66.4	3.9e-21	315	353	1	39
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrs 39 d+epgrCrRtDGKkWRCs+ +l+g+k+C++H+hrg +++ 676735196 315 DNEPGRCRRTDGKKWRCSKGALSGQKYCDKHMHRGIKKK 353 68*********************************8876 PP
3	QLQ	41.2	5e-15	22	57	2	37
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++ aaQl ++k+Q+l+y+y+ a+ vP++L+++i++ 676735196 22 WMKAAQLLEFKMQALVYRYIEAGIRVPHHLVVPIWN 57 789********************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	1.8E-7	21	57	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	15.519	22	57	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	5.6E-8	24	56	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	24.059	91	135	IPR014977	WRC domain
Pfam	PF08879	2.0E-19	92	134	IPR014977	WRC domain
PROSITE profile	PS51667	21.473	315	359	IPR014977	WRC domain
Pfam	PF08879	1.5E-17	317	354	IPR014977	WRC domain
Gene3D	G3DSA:3.50.50.60	4.2E-4	330	394	IPR023753	FAD/NAD(P)-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0055114	Biological Process	oxidation-reduction process
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding
GO:0016491	Molecular Function	oxidoreductase activity

Sequence ? help Back to Top
Protein Sequence Length: 425 aa Download sequence Send to blast
MQDPKIEGEE EEEESGKKKW PWMKAAQLLE FKMQALVYRY IEAGIRVPHH LVVPIWNSLA 60 LASSSSSSSS SSNYIIHHNH HLPSQLNNKV EPEPTRCRRT DGKKWQCSNR VLLSQKYCER 120 HMHRGRKRSR KLVESSSYDV ASSSASTRRD NTDGLDTSNE SHSVFHEAMS VSNNAQAVTI 180 ASLPSANVCD NAIRPSLVIT ESSNKSVSYR DRRRSITEVS YDDFTKQRDL TMCVRGFPVQ 240 GCERLPSVRN FFPEASDISL EAAKFSSNRK NEIIARSREW KNMNVNGGFF PGIHFSPDTV 300 LQDRSRFRLH RFETDNEPGR CRRTDGKKWR CSKGALSGQK YCDKHMHRGI KKKHPVDTAN 360 SHETAATSVS CKNGDDQKVS VSVLGVPLSR VKSTSSCSTD TTITDIALRG EEDNEEVLSL 420 CSSGF

Sequence ? help Back to Top

Protein Sequence Length: 425 aa Download sequence Send to blast

MQDPKIEGEE EEEESGKKKW PWMKAAQLLE FKMQALVYRY IEAGIRVPHH LVVPIWNSLA  60
LASSSSSSSS SSNYIIHHNH HLPSQLNNKV EPEPTRCRRT DGKKWQCSNR VLLSQKYCER  120
HMHRGRKRSR KLVESSSYDV ASSSASTRRD NTDGLDTSNE SHSVFHEAMS VSNNAQAVTI  180
ASLPSANVCD NAIRPSLVIT ESSNKSVSYR DRRRSITEVS YDDFTKQRDL TMCVRGFPVQ  240
GCERLPSVRN FFPEASDISL EAAKFSSNRK NEIIARSREW KNMNVNGGFF PGIHFSPDTV  300
LQDRSRFRLH RFETDNEPGR CRRTDGKKWR CSKGALSGQK YCDKHMHRGI KKKHPVDTAN  360
SHETAATSVS CKNGDDQKVS VSVLGVPLSR VKSTSSCSTD TTITDIALRG EEDNEEVLSL  420
CSSGF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	124	131	GRKRSRKL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. {ECO:0000269\|PubMed:21036927}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676735196

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). {ECO:0000269\|PubMed:15200956, ECO:0000269\|PubMed:19453503, ECO:0000269\|PubMed:20023165}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013632347.1	0.0	PREDICTED: growth-regulating factor 9
Swissprot	Q8S9M3	1e-179	GRF9_ARATH; Growth-regulating factor 9
TrEMBL	A0A0D3C6E5	0.0	A0A0D3C6E5_BRAOL; Uncharacterized protein
STRING	Bo4g195580.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13760	20	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45480.1	1e-176	growth-regulating factor 9

Publications ? help Back to Top
Cao Y,Han Y,Jin Q,Lin Y,Cai Y Comparative Genomic Analysis of the GRF Genes in Chinese Pear (Pyrus bretschneideri Rehd), Poplar (Populous), Grape (Vitis vinifera), Arabidopsis and Rice (Oryza sativa). Front Plant Sci, 2016. 7: p. 1750 [PMID:27933074]