PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676735010

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

CO-like

Protein Properties

Length: 316aa MW: 36208.2 Da PI: 6.8115

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676735010	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	17.6	8.2e-06	11	43	2	34
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeH 34 + r C+ +++ + +C+ ++ lC C + H 676735010 11 QHRLCDYCDSSVALVYCKADSAKLCLACDKQVH 43 6689**************************999 PP
2	zf-B_box	22.9	1.7e-07	56	98	4	42
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg....Htvvpl 42 C+ +++ + + fC + ++ lC++C ++H + H+++pl 676735010 56 LLCDSCDDSPSSVFCDTERSVLCQNCDWQHHTSssslHSRRPL 98 57***************************88668899988775 PP
3	CCT	58.6	2.2e-20	272	315	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R+ al+RYk K+k+R++eK+irYesRK++AesR R++GrF+k++ 676735010 272 RNSALSRYKAKKKSRRYEKHIRYESRKVRAESRTRIRGRFAKAD 315 899**************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50119	10.111	10	57	IPR000315	B-box-type zinc finger
SMART	SM00336	1.2E-12	10	57	IPR000315	B-box-type zinc finger
CDD	cd00021	7.33E-6	13	57	No hit	No description
PROSITE profile	PS50119	10.21	53	98	IPR000315	B-box-type zinc finger
CDD	cd00021	1.59E-4	57	84	No hit	No description
SMART	SM00336	0.33	58	98	IPR000315	B-box-type zinc finger
Pfam	PF06203	1.5E-14	272	314	IPR010402	CCT domain
PROSITE profile	PS51017	14.326	272	314	IPR010402	CCT domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 316 aa Download sequence Send to blast
MEKEEEGSHQ QHRLCDYCDS SVALVYCKAD SAKLCLACDK QVHVTNQLFS KHFRSLLCDS 60 CDDSPSSVFC DTERSVLCQN CDWQHHTSSS SLHSRRPLEG FSGCPSATEL MAIVGLDDLT 120 HKALFAPDSA GQHFSLSLSL SQNRHATCGR HKEEMIRQLR ELSRSEPTFL KYETLDPELD 180 LDAGFQFLEP ENDGHLFSST FDYQVSELKW FDDQEHDHDF PYCSSPQKNL SESETNKYVN 240 RRGCTQQESS SVMVPVTTCA TRSTHEINSL ERNSALSRYK AKKKSRRYEK HIRYESRKVR 300 AESRTRIRGR FAKADP

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676735010

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189634	1e-113	AC189634.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS004I08, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009142494.1	1e-162	PREDICTED: zinc finger protein CONSTANS-LIKE 13
Swissprot	O82256	1e-141	COL13_ARATH; Zinc finger protein CONSTANS-LIKE 13
TrEMBL	M4CJN9	1e-161	M4CJN9_BRARP; Uncharacterized protein
STRING	Bra004423.1-P	1e-162	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8148	27	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47890.1	1e-110	B-box type zinc finger protein with CCT domain

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]