PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676734800
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family B3
Protein Properties Length: 316aa    MW: 35426.4 Da    PI: 6.6816
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676734800genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3102.22.8e-3235140199
                EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS..SEE..E CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr..sefelv 93 
                f+kv tpsdv+k++rlv+pk++ae++    ++++e++  l +ed++g+sW+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++  g+  ++ +l+
  676734800  35 FDKVVTPSDVGKLNRLVIPKQHAERYfpldSSSNEKGLLLNFEDLTGKSWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDIVSFQRCvGDsgRDSRLF 134
                89****************************66677899*************************************************4433324677788 PP

                EEEE-S CS
         B3  94 vkvfrk 99 
                + ++r+
  676734800 135 IDWRRR 140
                888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.3E-4129142IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.92E-3032127IPR015300DNA-binding pseudobarrel domain
CDDcd100178.67E-2633135No hitNo description
PROSITE profilePS5086314.74835141IPR003340B3 DNA binding domain
PfamPF023621.8E-2935140IPR003340B3 DNA binding domain
SMARTSM010192.6E-2335141IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009908Biological Processflower development
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MMTTNLSLAR EGDEEEEEEA EAKKPMEEVE REHMFDKVVT PSDVGKLNRL VIPKQHAERY  60
FPLDSSSNEK GLLLNFEDLT GKSWRFRYSY WNSSQSYVMT KGWSRFVKDK KLDAGDIVSF  120
QRCVGDSGRD SRLFIDWRRR PKVPDHPTSI AHFAAGAMFP RFYTFPTATA STSYNLYNHQ  180
QPRHHHSGYS YPQLPREFGY GYLVRSVDQR AVVADPLVID SVPVMMHGGA RVNQAVNVGT  240
AAGKRLRLFG VDMECGESGV TNSTDPEEES SSSGGSLPRG GASSSSSLFQ LRLGSSCEDD  300
HFSKKGKSSL PFDLDQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A8e-79301433116B3 domain-containing transcription factor NGA1
5os9_B8e-79301433116B3 domain-containing transcription factor NGA1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRegulates lateral organ growth. Functionally redundant with NGA2, NGA3 and NGA4. {ECO:0000269|PubMed:16603651}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676734800
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2324910.0AC232491.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB049N04, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013734875.10.0B3 domain-containing transcription factor NGA1-like
SwissprotO827991e-166NGA1_ARATH; B3 domain-containing transcription factor NGA1
TrEMBLA0A1J3IYX30.0A0A1J3IYX3_NOCCA; B3 domain-containing transcription factor NGA1
STRINGBo3g039420.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13072899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.11e-153B3 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Lee BH, et al.
    The Arabidopsis thaliana NGATHA transcription factors negatively regulate cell proliferation of lateral organs.
    Plant Mol. Biol., 2015. 89(4-5): p. 529-38
    [PMID:26433582]
  3. Lozano-Sotomayor P, et al.
    Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana.
    Plant J., 2016. 88(3): p. 437-451
    [PMID:27402171]
  4. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]
  5. Sasnauskas G,Manakova E,Lapėnas K,Kauneckaitė K,Siksnys V
    DNA recognition by Arabidopsis transcription factors ABI3 and NGA1.
    FEBS J., 2018. 285(21): p. 4041-4059
    [PMID:30183137]
  6. Sato H, et al.
    Arabidopsis thaliana NGATHA1 transcription factor induces ABA biosynthesis by activating NCED3 gene during dehydration stress.
    Proc. Natl. Acad. Sci. U.S.A., 2018. 115(47): p. E11178-E11187
    [PMID:30397148]