PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676734782

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

Trihelix

Protein Properties

Length: 393aa MW: 43004.1 Da PI: 9.4219

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676734782	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	67.5	2.6e-21	63	154	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqlea 87 +W+ +e+ aLi+a+r+++ +l+rg+lk+++Weev++++ + +++++qC++k+e+l+kry+ + +++++ ++ s++++++++ea 676734782 63 CWSPEETTALIDAYRDKWYALNRGNLKANHWEEVAEAVgtncPDATPKKTAVQCRHKMEKLRKRYRTEIQRARSVpVARFISSWVHYKRMEA 154 7**********************************9999888889***********************9779999*******85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	0.0015	60	126	IPR001005	SANT/Myb domain
Pfam	PF13837	3.8E-21	62	155	No hit	No description
PROSITE profile	PS50090	6.679	64	124	IPR017877	Myb-like domain
SMART	SM00595	8.6E-17	71	160	IPR006578	MADF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 393 aa Download sequence Send to blast
MSDPDSPLTH DPIPDPSPVR DQSSPPVSIS LLPPPSSEPQ TDLKPATTTP TTSKSSRRLP 60 PPCWSPEETT ALIDAYRDKW YALNRGNLKA NHWEEVAEAV GTNCPDATPK KTAVQCRHKM 120 EKLRKRYRTE IQRARSVPVA RFISSWVHYK RMEAMENRPE TTKQGNESGD EDNDEDDDDG 180 SYAARYHHQF GGGSFKNGGG SAARTTPRFY NRNGTAGSGG GGGSSSSGGI RIRIPTGVSI 240 AQAGPRFHGK IDPKYTASTN PRPGRLGARV VRIPEGGGGG EERGGTSTTG KRGREMMMMT 300 TTTEESDDPM AEIAGAIKLL GDTLLRTEQS KMEMTKEIEG MRMEMEMKRT KMILESQQRI 360 VEAFAKTMSE NLEEKKKKKA TRLSSSLAAA ESS

Sequence ? help Back to Top

Protein Sequence Length: 393 aa Download sequence Send to blast

MSDPDSPLTH DPIPDPSPVR DQSSPPVSIS LLPPPSSEPQ TDLKPATTTP TTSKSSRRLP  60
PPCWSPEETT ALIDAYRDKW YALNRGNLKA NHWEEVAEAV GTNCPDATPK KTAVQCRHKM  120
EKLRKRYRTE IQRARSVPVA RFISSWVHYK RMEAMENRPE TTKQGNESGD EDNDEDDDDG  180
SYAARYHHQF GGGSFKNGGG SAARTTPRFY NRNGTAGSGG GGGSSSSGGI RIRIPTGVSI  240
AQAGPRFHGK IDPKYTASTN PRPGRLGARV VRIPEGGGGG EERGGTSTTG KRGREMMMMT  300
TTTEESDDPM AEIAGAIKLL GDTLLRTEQS KMEMTKEIEG MRMEMEMKRT KMILESQQRI  360
VEAFAKTMSE NLEEKKKKKA TRLSSSLAAA ESS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676734782

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006397652.1	0.0	trihelix transcription factor ASIL2
TrEMBL	V4KMI1	0.0	V4KMI1_EUTSA; Uncharacterized protein
STRING	XP_006397652.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8963	25	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44730.1	1e-113	Trihelix family protein