PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676734764
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family HD-ZIP
Protein Properties Length: 264aa    MW: 30793.8 Da    PI: 4.5844
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676734764genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.98.5e-193285356
               --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
               + ++f++eq++ Le +Fe++  +  +++ +LA++lgL+ rqV +WFqN+Ra++k
  676734764 32 NQRRFSDEQIKSLEMMFESETRLEPRKKVQLARELGLQPRQVAIWFQNKRARWK 85
               6689*************************************************9 PP

2HD-ZIP_I/II120.68.3e-3932123293
  HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                  ++rr+s+eq+k+LE++Fe+e++Lep++Kv+lareLglqprqva+WFqn+RAR+k+kqlE++++ L+++y+ l+++ ++L+ke+ +L +el++
    676734764  32 NQRRFSDEQIKSLEMMFESETRLEPRKKVQLARELGLQPRQVAIWFQNKRARWKSKQLETEFNILRQSYNDLASQFDSLKKEKLALVSELSR 123
                  68*************************************************************************************99975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.18E-172189IPR009057Homeodomain-like
PROSITE profilePS5007117.6532787IPR001356Homeobox domain
CDDcd000861.83E-143088No hitNo description
SMARTSM003897.0E-163091IPR001356Homeobox domain
PfamPF000463.7E-163285IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.2E-183393IPR009057Homeodomain-like
PRINTSPR000318.1E-65867IPR000047Helix-turn-helix motif
PROSITE patternPS0002706285IPR017970Homeobox, conserved site
PRINTSPR000318.1E-66783IPR000047Helix-turn-helix motif
PfamPF021832.8E-1387129IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MTEGGEYSPV RMSADPFMTM KKTKKSNHNK NNQRRFSDEQ IKSLEMMFES ETRLEPRKKV  60
QLARELGLQP RQVAIWFQNK RARWKSKQLE TEFNILRQSY NDLASQFDSL KKEKLALVSE  120
LSRLNEEMQK THEEERLCRG DQAAVVAVSS TDHESENEEN TRREPEEEVK PEMEVCEKGH  180
DGVLCGHHND EYDDDDDGGG GGYDNSNIKR EYFGGFEEEA DHLMNIVEPT DSCLTSSDDW  240
RGFRSDTNLL DQTSSNYPWW DFWS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269|PubMed:15604708, ECO:0000269|PubMed:8771791}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00320DAPTransfer from AT2G46680Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676734764
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:8771791}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3528711e-172AK352871.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-14-L20.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013712527.11e-165homeobox-leucine zipper protein ATHB-7
SwissprotP468971e-147ATHB7_ARATH; Homeobox-leucine zipper protein ATHB-7
TrEMBLA0A078HUR31e-163A0A078HUR3_BRANA; BnaC04g00750D protein
STRINGBo4g007060.11e-162(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24982874
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.11e-122homeobox 7
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhou SF, et al.
    Membrane-associated transcription factor peptidase, site-2 protease, antagonizes ABA signaling in Arabidopsis.
    New Phytol., 2015. 208(1): p. 188-97
    [PMID:25919792]