PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676734764 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 264aa MW: 30793.8 Da PI: 4.5844 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.9 | 8.5e-19 | 32 | 85 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 + ++f++eq++ Le +Fe++ + +++ +LA++lgL+ rqV +WFqN+Ra++k 676734764 32 NQRRFSDEQIKSLEMMFESETRLEPRKKVQLARELGLQPRQVAIWFQNKRARWK 85 6689*************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 120.6 | 8.3e-39 | 32 | 123 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 ++rr+s+eq+k+LE++Fe+e++Lep++Kv+lareLglqprqva+WFqn+RAR+k+kqlE++++ L+++y+ l+++ ++L+ke+ +L +el++ 676734764 32 NQRRFSDEQIKSLEMMFESETRLEPRKKVQLARELGLQPRQVAIWFQNKRARWKSKQLETEFNILRQSYNDLASQFDSLKKEKLALVSELSR 123 68*************************************************************************************99975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.18E-17 | 21 | 89 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.653 | 27 | 87 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.83E-14 | 30 | 88 | No hit | No description |
SMART | SM00389 | 7.0E-16 | 30 | 91 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 3.7E-16 | 32 | 85 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 4.2E-18 | 33 | 93 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 8.1E-6 | 58 | 67 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 62 | 85 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 8.1E-6 | 67 | 83 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 2.8E-13 | 87 | 129 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009738 | Biological Process | abscisic acid-activated signaling pathway | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 264 aa Download sequence Send to blast |
MTEGGEYSPV RMSADPFMTM KKTKKSNHNK NNQRRFSDEQ IKSLEMMFES ETRLEPRKKV 60 QLARELGLQP RQVAIWFQNK RARWKSKQLE TEFNILRQSY NDLASQFDSL KKEKLALVSE 120 LSRLNEEMQK THEEERLCRG DQAAVVAVSS TDHESENEEN TRREPEEEVK PEMEVCEKGH 180 DGVLCGHHND EYDDDDDGGG GGYDNSNIKR EYFGGFEEEA DHLMNIVEPT DSCLTSSDDW 240 RGFRSDTNLL DQTSSNYPWW DFWS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269|PubMed:15604708, ECO:0000269|PubMed:8771791}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00320 | DAP | Transfer from AT2G46680 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676734764 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:8771791}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK352871 | 1e-172 | AK352871.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-14-L20. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013712527.1 | 1e-165 | homeobox-leucine zipper protein ATHB-7 | ||||
Swissprot | P46897 | 1e-147 | ATHB7_ARATH; Homeobox-leucine zipper protein ATHB-7 | ||||
TrEMBL | A0A078HUR3 | 1e-163 | A0A078HUR3_BRANA; BnaC04g00750D protein | ||||
STRING | Bo4g007060.1 | 1e-162 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2498 | 28 | 74 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46680.1 | 1e-122 | homeobox 7 |
Publications ? help Back to Top | |||
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