PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676734728
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family ARF
Protein Properties Length: 604aa    MW: 67858 Da    PI: 7.1965
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676734728genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.74.4e-23124224198
                EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                f+k+lt sd++++g +++ +k+a+e+     + +++ +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv  ++L +gD +vF   + +++ l+v+
  676734728 124 FVKILTASDTSTHGGFSVLRKHATEClpsldMTQPTPTQELVARDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTTKRLVAGDAFVFL--RGKTGDLRVG 221
                89****************************9666677789************************************************..3488889*** PP

                EE- CS
         B3  96 vfr 98 
                v+r
  676734728 222 VRR 224
                998 PP
2Auxin_resp66.11.2e-22250319183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 a+ha++t+++F v+Y+Pr   s+F+++v+k+++a+k+ +++GmRf+m+f          +Gt++g+ dl+p +Wp SkWrsL+
   676734728 250 ASHAFKTTTMFVVLYKPRI--SQFIISVNKYMEAMKNGFAIGMRFRMRF----------TGTITGTGDLSP-QWPASKWRSLQ 319
                 689***************8..9*************************87..........8***********.*********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.62E-39109253IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.0E-37118239IPR015300DNA-binding pseudobarrel domain
CDDcd100171.61E-19123224No hitNo description
SMARTSM010194.7E-21124226IPR003340B3 DNA binding domain
PfamPF023623.9E-21124224IPR003340B3 DNA binding domain
PROSITE profilePS5086311.956124226IPR003340B3 DNA binding domain
PfamPF065072.9E-20250319IPR010525Auxin response factor
PfamPF023096.5E-14469570IPR033389AUX/IAA domain
SuperFamilySSF542778.34E-15481559No hitNo description
PROSITE profilePS5174529.176483575IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0009506Cellular Componentplasmodesma
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 604 aa     Download sequence    Send to blast
MANVDDDFRR SGSYDDQLYM ELWKACAGPL VEVPRYGERV FYFPQGHMEQ LVASTNQRVV  60
DQEIPVFDLP PKILCRVLNV MLKAEHETDE VYAQITLQPE EHQSEPTSLD PPVSEPAKQT  120
VDSFVKILTA SDTSTHGGFS VLRKHATECL PSLDMTQPTP TQELVARDLH GYEWRFKHIF  180
RGQPRRHLLT TGWSTFVTTK RLVAGDAFVF LRGKTGDLRV GVRRLARQQS TMPASVISSQ  240
SMHLGVLATA SHAFKTTTMF VVLYKPRISQ FIISVNKYME AMKNGFAIGM RFRMRFTGTI  300
TGTGDLSPQW PASKWRSLQI QWDEPSTVQR PNKVSPWEIE PFLPSTLTIS PTQPLSKSKR  360
SRPIDSSVSE ITGSPVASNF LLNSFPQSHE PNTSIKLLFQ DASSERKSNK GVFSSESQCH  420
NTETPATSSC RLFGFDLKSK PASAQIPPDK QIISVDSNNS GTTKCQDPNS LNSVKDQKQT  480
SPRSRIKVQM QGTAVGRAVD LTLLRSYDDL ISELEKMFEI EGELRPKDKW AIVFTDDEGD  540
MMLVGDDPWN EFCKMAKKLF IYSSDEVKQL SSKSSLDDED MQKHTELERD HKLGGVGGNV  600
SLMN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1541234213355Auxin response factor 1
4ldw_A1e-1541234213355Auxin response factor 1
4ldw_B1e-1541234213355Auxin response factor 1
4ldx_A1e-1541234213355Auxin response factor 1
4ldx_B1e-1541234213355Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676734728
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3533630.0AK353363.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-29-L13.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013633548.10.0PREDICTED: auxin response factor 11
SwissprotQ9ZPY60.0ARFK_ARATH; Auxin response factor 11
TrEMBLA0A0D3BNS50.0A0A0D3BNS5_BRAOL; Auxin response factor
STRINGBo4g008150.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM74351841
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46530.10.0auxin response factor 11
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]