PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676734598
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family BES1
Protein Properties Length: 685aa    MW: 76446 Da    PI: 6.1574
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676734598genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822152.14.4e-47622111141
     DUF822   1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyr...kgskpl..eeaeaagssas..aspess 93 
                ggs+r+++ +E+E++k+RER+RRai+a+i+ GLR++Gny+l++raD+n+V++AL+reAGwvv +DGtt++   +g+kp+  ++a +a ssas  as++ss
  676734598  62 GGSRRSRPLEEKERTKLRERHRRAITARILGGLRRHGNYNLRVRADINDVIAALAREAGWVVLPDGTTFPsksQGTKPPgsSSAVVACSSAShmASQQSS 161
                689******************************************************************9888999999743333333333344778888 PP

     DUF822  94 lq.sslks.salaspvesysaspksssfpspssldsislasaasllpvls 141
                   ++l+s s  +sp+e  s+++k +  p ps +d  +++s+  + +v +
  676734598 162 PPaLRLVSlSGHRSPTELNSCRMKGVFAPTPSPYDLPPNQSSDLVGSVNK 211
                7777776637899***********************99998744444444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056876.3E-4063195IPR008540BES1/BZR1 plant transcription factor, N-terminal
SuperFamilySSF514455.04E-171240683IPR017853Glycoside hydrolase superfamily
Gene3DG3DSA:3.20.20.803.6E-183243680IPR013781Glycoside hydrolase, catalytic domain
PfamPF013733.2E-94249669IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.2E-63280294IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.2E-63301319IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.2E-63323344IPR001554Glycoside hydrolase, family 14
PROSITE patternPS005060327335IPR018238Glycoside hydrolase, family 14, conserved site
PRINTSPR007502.2E-63416438IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.2E-63489508IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.2E-63523539IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.2E-63540551IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.2E-63558581IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.2E-63598620IPR001554Glycoside hydrolase, family 14
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000272Biological Processpolysaccharide catabolic process
GO:0048831Biological Processregulation of shoot system development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016161Molecular Functionbeta-amylase activity
Sequence ? help Back to Top
Protein Sequence    Length: 685 aa     Download sequence    Send to blast
MVTEMQKLLG TSEEDDDEEM DTDVKEEDDG DRRNKGTRAA SGSSNDEFMF QQSMQDQVDT  60
PGGSRRSRPL EEKERTKLRE RHRRAITARI LGGLRRHGNY NLRVRADIND VIAALAREAG  120
WVVLPDGTTF PSKSQGTKPP GSSSAVVACS SASHMASQQS SPPALRLVSL SGHRSPTELN  180
SCRMKGVFAP TPSPYDLPPN QSSDLVGSVN KADGLVGCSV DVINSKQILE VSPNLTEQDF  240
SGTPYVPVYV MLPLGVINMK CELADRDGLL KHLRILKSIH VDGVKVDCWW GIAECHSPQE  300
YNWNGYRQLF QIVRDLNLKI QVLMSFHECG GNVGDDVCIP LPHWVAEIGR TNPDIYFTDK  360
EGRRNPECLS WGIDKERVLR GRTALEVYFD YMRSFRIELA EFLEDGVISM VEIGLGPCGE  420
LRYPSSPIKH GWRYPGVGEF QCYDKYLLKS LRKAAESRGH LFWARGPDNA GSYNSQPQGT  480
GFFCDGGDYD GLYGRFFLKW YSQVLIDHAD QILSLAKLVF DGSCIAAKLP DVHWWYRTAS  540
HAAELTAGFY NPSNRDGYAA IASTLKKHGA TLSFVSGEVQ VLNRPDDFSG SLGEPEAVAW  600
QVLNAAWDTD TPIARENSLP CHDRVGYNKM LESVKFPNDP DRRHLSSFAY SRLIPALLDG  660
HNLVEFDQFV KKLHGEAIVD HHQQV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wdq_A1e-14024567611444Beta-amylase
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap676734598
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2273230.0AK227323.1 Arabidopsis thaliana mRNA for putative beta-amylase, complete cds, clone: RAFL14-01-P19.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006397762.10.0beta-amylase 7
SwissprotO808310.0BAM7_ARATH; Beta-amylase 7
TrEMBLV4KMT30.0V4KMT3_EUTSA; Beta-amylase
STRINGXP_006397762.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29452535
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45880.10.0beta-amylase 7
Publications ? help Back to Top
  1. Soyk S, et al.
    The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation.
    Plant Cell, 2014. 26(4): p. 1746-1763
    [PMID:24748042]