PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676734570
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family HD-ZIP
Protein Properties Length: 788aa    MW: 86465.1 Da    PI: 6.8733
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676734570genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.76.2e-21108163156
                TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                +++ +++t++q++eLe++F+++++p++++r +L+++l+L+ rqVk+WFqNrR+++k
  676734570 108 KKRYHRHTPQQIQELESVFKECPHPDEKQRLDLSRRLHLDSRQVKFWFQNRRTQMK 163
                688999***********************************************999 PP
2START188.14.5e-593095361206
                HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECT CS
      START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetleviss 87 
                ela++a++elvk+a+ +ep+W kss    e++n++e+ +++++  +     + +ea++++g+v+ ++  lve+l+d+  +W e+++    k +t+e iss
  676734570 309 ELALSAMDELVKMAQTSEPLWIKSSkgkrEMLNREEYDRILTPCLGpkpegFVSEASKEIGMVIINSLALVETLMDSE-RWAEMFPcmiaKNSTTEIISS 407
                57899********************999999999999999988666999999**************************.********************* PP

                T......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXX CS
      START  88 g......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlp 177
                g      gal+lm+aelq+lsplvp R + f+R+++q+g+g+w++vdvSvd  +++       s+  +++lpSg+l+++++ng+skvtw++h+++++ ++
  676734570 408 GmggtrnGALHLMQAELQLLSPLVPvRQVNFLRFCKQHGEGVWAVVDVSVDKISDRGGsasGRSSLTCRRLPSGCLVQDMPNGYSKVTWIDHTEYDETII 507
                ***************************************************99998765566788889******************************** PP

                HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
      START 178 hwllrslvksglaegaktwvatlqrqcek 206
                h l+r+lv+sg+a+g k+w ++lqrqce+
  676734570 508 HHLYRPLVSSGQAFGSKRWISALQRQCES 536
                ***************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.74E-2093165IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-2096165IPR009057Homeodomain-like
PROSITE profilePS5007117.41105165IPR001356Homeobox domain
SMARTSM003895.5E-19106169IPR001356Homeobox domain
CDDcd000862.00E-18108165No hitNo description
PfamPF000461.5E-18108163IPR001356Homeobox domain
PROSITE patternPS000270140163IPR017970Homeobox, conserved site
PROSITE profilePS5084841.192300539IPR002913START domain
SuperFamilySSF559615.36E-29304536No hitNo description
CDDcd088753.62E-115304535No hitNo description
PfamPF018521.5E-51309536IPR002913START domain
SMARTSM002343.2E-48309536IPR002913START domain
SuperFamilySSF559613.16E-21565780No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 788 aa     Download sequence    Send to blast
MNFSGFLHHD NDKSSNGETV GGGNHFSSAV AAAMPSGLVK SIFSSPRLSL GLQTNVENNG  60
GEVGRTGEGY EVSVTTRRSP ESRSGSDNAE ALSGDDDLDA SDRPLKKKKR YHRHTPQQIQ  120
ELESVFKECP HPDEKQRLDL SRRLHLDSRQ VKFWFQNRRT QMKTQIERHE NSLLRQENDK  180
LRAENMSVRE AMRNPMCGHC GGSAVLGEIS LEEHHLRIEN SRLKDELDRI CALAGKFINR  240
SNDDVAGLHH LPNSTLELGV GSKNVYDGGA CGGGFTLVPP GFDISSSPFL SGLATPVTTG  300
VDHKSLYMEL ALSAMDELVK MAQTSEPLWI KSSKGKREML NREEYDRILT PCLGPKPEGF  360
VSEASKEIGM VIINSLALVE TLMDSERWAE MFPCMIAKNS TTEIISSGMG GTRNGALHLM  420
QAELQLLSPL VPVRQVNFLR FCKQHGEGVW AVVDVSVDKI SDRGGSASGR SSLTCRRLPS  480
GCLVQDMPNG YSKVTWIDHT EYDETIIHHL YRPLVSSGQA FGSKRWISAL QRQCESLTIL  540
MSTTIPNRNK PTPAISSIGK KSMLKLAQRM TNNFCRGVCA SSSQKWSKLD IGNIDEDVRI  600
MTRKNVDDSG EPPGILLSAA TSVWVPVSPR RLFDFLRDEL LRSEWDILSN GGPMQEIANI  660
FKGQDHSNSV SLLRSTAMNA NQSSMLILQE TSIDASGAIV VYAPVDIPAM HSVMNGGDSA  720
YVALLPSGFA ILPDGQGVEE TGSLLTVAFQ ILVNSLPTAK LNVESIETVN NLISCTVQKI  780
RAALRCDK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676734570
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013748124.10.0homeobox-leucine zipper protein HDG1-like isoform X1
SwissprotQ9M2E80.0HDG1_ARATH; Homeobox-leucine zipper protein HDG1
TrEMBLA0A3P6BG640.0A0A3P6BG64_BRAOL; Uncharacterized protein
STRINGBra004934.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM112827105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61150.10.0homeodomain GLABROUS 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Horstman A, et al.
    AIL and HDG proteins act antagonistically to control cell proliferation.
    Development, 2015. 142(3): p. 454-64
    [PMID:25564655]