PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676734548
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family MIKC_MADS
Protein Properties Length: 240aa    MW: 27312.9 Da    PI: 8.3621
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676734548genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF98.33.2e-31958150
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
               k ienk+nrqvtfskRrng+lKKA+ELSvLCdaeva+i+fss+gklye+ 
  676734548  9 KMIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIVFSSRGKLYEFG 58
               68**********************************************95 PP
2K-box73.17.9e-2578158584
      K-box   5 sgks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkke 84 
                s+++  e+++a +++qe++kLk+++e+L r++RhllGedL+++s+keLq +e+qLe +l+  R++K++ l +  ++l+ k 
  676734548  78 SNNRpEESTQACNWCQEVTKLKSKYESLVRTNRHLLGEDLGEMSVKELQAMEKQLEAALTATRQRKERQLGDINKQLKIKF 158
                444567889999**********************************************************99999999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.73161IPR002100Transcription factor, MADS-box
SMARTSM004322.4E-41160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.23E-33289IPR002100Transcription factor, MADS-box
CDDcd002654.42E-43270No hitNo description
PRINTSPR004049.5E-32323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003194.3E-271157IPR002100Transcription factor, MADS-box
PRINTSPR004049.5E-322338IPR002100Transcription factor, MADS-box
PRINTSPR004049.5E-323859IPR002100Transcription factor, MADS-box
PfamPF014867.0E-2183157IPR002487Transcription factor, K-box
PROSITE profilePS5129711.34288175IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009553Biological Processembryo sac development
GO:0009911Biological Processpositive regulation of flower development
GO:0010094Biological Processspecification of carpel identity
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010582Biological Processfloral meristem determinacy
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048455Biological Processstamen formation
GO:0048459Biological Processfloral whorl structural organization
GO:0048509Biological Processregulation of meristem development
GO:0048833Biological Processspecification of floral organ number
GO:0080060Biological Processintegument development
GO:0080112Biological Processseed growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MGRGRVEMKM IENKINRQVT FSKRRNGLLK KAYELSVLCD AEVALIVFSS RGKLYEFGSV  60
GVERTIERYH RSYNCSLSNN RPEESTQACN WCQEVTKLKS KYESLVRTNR HLLGEDLGEM  120
SVKELQAMEK QLEAALTATR QRKERQLGDI NKQLKIKFEA EGHALKSFQD LWPNSVSSVA  180
GDPNISEFPV QSSHPHSVDC NTEPFLQIGF QQHYYVQGEG SSISKSNVAC ETNFVQGWVL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A6e-201101194MEF2C
5f28_B6e-201101194MEF2C
5f28_C6e-201101194MEF2C
5f28_D6e-201101194MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Forms a heterodimer via the K-box domain with AG, that could be involved in genes regulation during floral meristem development.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00315DAPTransfer from AT2G45650Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676734548
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ5080551e-146AJ508055.1 Brassica oleracea var. botrytis mRNA for MADS-box protein AGL6-a (agl6-a gene), long splice variant.
GenBankAJ5084091e-146AJ508409.1 Brassica oleracea var. botrytis mRNA for MADS-box protein AGL6-a (agl6-a gene), short splice variant.
GenBankKC9843011e-146KC984301.2 Brassica oleracea var. viridis AGL6 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013691306.11e-155agamous-like MADS-box protein AGL6
SwissprotP293861e-154AGL6_ARATH; Agamous-like MADS-box protein AGL6
TrEMBLQ8GTE81e-153Q8GTE8_BRAOB; MADS-box protein AGL6-a
STRINGBo4g024840.11e-154(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43022654
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45650.11e-157AGAMOUS-like 6
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Dreni L,Zhang D
    Flower development: the evolutionary history and functions of the AGL6 subfamily MADS-box genes.
    J. Exp. Bot., 2016. 67(6): p. 1625-38
    [PMID:26956504]