PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676733480
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family G2-like
Protein Properties Length: 915aa    MW: 103271 Da    PI: 7.3567
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676733480genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.93.9e-32241295155
    G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                k+r+rWtpeLHe+Fvea++qLGGse+AtPk++l+l++ +gLt++hvkSHLQkYR+
  676733480 241 KQRMRWTPELHEAFVEAINQLGGSERATPKAVLKLINSPGLTIYHVKSHLQKYRT 295
                79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.209238298IPR017930Myb domain
SuperFamilySSF466891.68E-16239295IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.3E-29240297IPR009057Homeodomain-like
TIGRFAMsTIGR015571.0E-22241295IPR006447Myb domain, plants
PfamPF002499.1E-10243294IPR001005SANT/Myb domain
PfamPF143793.5E-22329376IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
PfamPF047572.8E-48470753IPR006845Pex, N-terminal
SuperFamilySSF578502.66E-5781820No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006513Biological Processprotein monoubiquitination
GO:0006635Biological Processfatty acid beta-oxidation
GO:0016558Biological Processprotein import into peroxisome matrix
GO:0048598Biological Processembryonic morphogenesis
GO:0005778Cellular Componentperoxisomal membrane
GO:0003677Molecular FunctionDNA binding
GO:0004842Molecular Functionubiquitin-protein transferase activity
Sequence ? help Back to Top
Protein Sequence    Length: 915 aa     Download sequence    Send to blast
MTLTGDFSFP TAMSSFLPLL PTTLEERYHY HKFSNSLWVS SGQELMNNPV PCQVFPLASG  60
GTSSGFCNGV YVSAHEKSSS QTRQSVAHVS VETQSLPLIN QPQEQKDMSW SEDQLQGFFD  120
FPVPDSQAES SRAMVSSEEV HSKSEWPDWA NQMISVDDGL EPNWSELLGD PSLNMNFFLF  180
VYLIIGLRIF IKESSHDVLQ IPIPSSDIAR QEIVVNNQHQ VDPSMEHFSA KNTPASSMTS  240
KQRMRWTPEL HEAFVEAINQ LGGSERATPK AVLKLINSPG LTIYHVKSHL QKYRTARYKP  300
ELSEDTEKPP LKNLKTIEDI KSLDLKTSIE ITEALRLQMQ VQKRLHEQLE VQRSLQLQIE  360
EQGRYLQMMI EKQQKMQEKK KTSSCSSSMP EADVDTSAPS PNFSPAVPKA NNSQPSVTQK  420
LQYGSCTLDE SGSPSGTTRK RKKKKKGRKR MLFQVGGEGT RPTFFEMAAA QQLPSSLRAA  480
LTYSLGVFAL RRSFLHKILD FEDEFFAALM LILEGHSLRT TDASFAESLY GLRRKSVRLR  540
LRKDGTRKDS AEEVQHSGLE KRQRILSVVF LVVLPYFKSK LHAIYNKERE ARLRESLWGT  600
EDQGFDEAEF FTGGEPIVSM ETNGNQELSV REQLATKIKK FIAVCYPWIH ASSEGLSFTY  660
QLLYLLDATG FYSLGLQALG IQVCRATGQE LMDTSSRISK IRNQERERLR GPPWLKTVQG  720
ALLSCSYAVL DYAQTGLIAA VFFFKMMEWW YQSAEERLTA PTVYPPPPPP PAPKVAKEGI  780
PLPPDSSLCA LCLQKRANPS VVTVSGFVFC YSCVFKYVSK PNGESFVLIL GLEMAQPESK  840
REDIKDCQKW IRFLVEFIKF GIKCILYCKE AVLLLTKAEF DGDEESRQMF FFSFLVSPSK  900
GIVYCTNGDD IIGPD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A1e-27241299260Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B1e-27241299260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A1e-27241299260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C1e-27241299260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D1e-27241299260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F1e-27241299260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H1e-27241299260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J1e-27241299260Protein PHOSPHATE STARVATION RESPONSE 1
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1438442RKRKK
2439445KRKKKKK
3440448RKKKKKGRK
Cis-element ? help Back to Top
SourceLink
PlantRegMap676733480
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1176510.0AK117651.1 Arabidopsis thaliana At3g04460 mRNA for unknown protein, complete cds, clone: RAFL17-31-C15.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04450.10.0G2-like family protein