PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676733308
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family G2-like
Protein Properties Length: 293aa    MW: 33706 Da    PI: 6.6302
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676733308genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like475.5e-1568120255
    G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                 r  W+ e H +F++a++ L G +   Pk+il++m+ + Ltl +v S LQkY+ 
  676733308  68 RRTLWNYERHMKFLSAISTL-GVNGSRPKSILKIMDDPNLTLRQVSSYLQKYKA 120
                6889****************.9******************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.08E-1266125IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.9E-1667124IPR009057Homeodomain-like
TIGRFAMsTIGR015571.7E-1168119IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MLMHVLPKKS QAYFLEKRSF MRTSTASGTY QEKRNIANND PKINLFCSME AENKSNTGKI  60
MVSNVGRRRT LWNYERHMKF LSAISTLGVN GSRPKSILKI MDDPNLTLRQ VSSYLQKYKA  120
QIERMYNTFN GAKVSSKKTI KEKDDSMKLN ITLPQTNIVH TCNSSFDECY DLPQEMVPSE  180
TNTTRVGIES GGLNYRSYSQ TSMITSGINM KDISQVQHDE GHNILIENMI SFDNDVNEMD  240
IESLLGNHGS SEMNLFSNMY PVHEAYNTPI EKRDYFCDRD FMDWIDNVNN EDV
Cis-element ? help Back to Top
SourceLink
PlantRegMap676733308
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM136851424
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68210.13e-31pseudo-response regulator 6