PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676732798

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

HB-other

Protein Properties

Length: 965aa MW: 106431 Da PI: 9.2825

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676732798	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	17.2	9e-06	67	123	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +r+R ++++ ++ L+++F+ + +s++e +e+++ g++ +q++ +F ++++ +k 676732798 67 KRPRDLLNPKAVKYLQAVFAIKDSISKKESREISALFGISVAQIRDFFVTQKTRVRK 123 799*********************************************999999886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	9.507	64	124	IPR001356	Homeobox domain
SMART	SM00389	9.1E-5	66	128	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	2.7E-4	67	126	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.15E-5	67	131	IPR009057	Homeodomain-like
CDD	cd00086	2.76E-4	67	124	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009911	Biological Process	positive regulation of flower development
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 965 aa Download sequence Send to blast
MDDAFKEEIE IGSSVESLME LLNSQKQLFH SQIDQLQDVV VTQCKLTGVN PLAQEMAAGA 60 LSIKIGKRPR DLLNPKAVKY LQAVFAIKDS ISKKESREIS ALFGISVAQI RDFFVTQKTR 120 VRKQVRVSRE KLMMSSALAL QGDGVPEKNN AIPLFDPVPL NSIGPEASSI SWGEGVTVAL 180 PPKEEVPQED LPPDISDSDK YFVENIFSLL RKEETFLGQV KLMEWIMQIQ DSSVLIWFLS 240 KGGVLILTTW LSQAATEEQT SVLLLILKVL CHLPLHKASP ENMSAILQSV NGLRFYRTSG 300 VISEKHKCCV AFINVKVRVV ISSISLSDLK IRHIKQGESI AEIMGDSSNP EDILSISNGR 360 SENGRRSKSS QGPKLLLTSA DDSTRKHMLG STPSSDNKER RKVQMVEQPG QKAAGRSPQT 420 VRIGTSSRSR PMSADDIQKA KMRALYMHSK NSKKDPLSSA IGDSKTVIPE KPLALQSAKD 480 SPPSENNEAK TEDTPESSSV QPVNSPAVNL PVQPVNSPAV NLPFQPVNSP AVNVPVQPVN 540 SPAVNVPVQP VSSPAVKMSG QADEFRKPST PPKIISNKVG VLLKMSPQTI LKNCKRKQIN 600 WHVPPGMELD ELWRVAAGGN SKEADVQKNR NRREKEIAYH SLQTIPLNPK EPWDREMDYD 660 DSLTPDIPSQ QPPEESITEP QESLYDRRTA AGAATSSSSQ SSSMEPDFEL LAALLKNPDL 720 LYALTSGNPG NLAGPDMVKL LDVIKTGASN SSSISYKKVE EKVEVSLPSP TPSTNPGMSG 780 WGQEAIRNPF SRQSQVGAAV ARMSTQLPVA SMQWQSSNEQ SIPRHAPSAY NSHTLAHTER 840 QQQQQPMQSR LLHQSQHLHQ QQQPILTNSY AVRESVGQMG TATSASWRSQ QSQNSYYTPQ 900 ANGIASASSY QVSEQYMSNN PGFESWSPDH SPSRNHPNMR GQQQQQPSRK HDSSHPYWNQ 960 NRRWR

Sequence ? help Back to Top

Protein Sequence Length: 965 aa Download sequence Send to blast

MDDAFKEEIE IGSSVESLME LLNSQKQLFH SQIDQLQDVV VTQCKLTGVN PLAQEMAAGA  60
LSIKIGKRPR DLLNPKAVKY LQAVFAIKDS ISKKESREIS ALFGISVAQI RDFFVTQKTR  120
VRKQVRVSRE KLMMSSALAL QGDGVPEKNN AIPLFDPVPL NSIGPEASSI SWGEGVTVAL  180
PPKEEVPQED LPPDISDSDK YFVENIFSLL RKEETFLGQV KLMEWIMQIQ DSSVLIWFLS  240
KGGVLILTTW LSQAATEEQT SVLLLILKVL CHLPLHKASP ENMSAILQSV NGLRFYRTSG  300
VISEKHKCCV AFINVKVRVV ISSISLSDLK IRHIKQGESI AEIMGDSSNP EDILSISNGR  360
SENGRRSKSS QGPKLLLTSA DDSTRKHMLG STPSSDNKER RKVQMVEQPG QKAAGRSPQT  420
VRIGTSSRSR PMSADDIQKA KMRALYMHSK NSKKDPLSSA IGDSKTVIPE KPLALQSAKD  480
SPPSENNEAK TEDTPESSSV QPVNSPAVNL PVQPVNSPAV NLPFQPVNSP AVNVPVQPVN  540
SPAVNVPVQP VSSPAVKMSG QADEFRKPST PPKIISNKVG VLLKMSPQTI LKNCKRKQIN  600
WHVPPGMELD ELWRVAAGGN SKEADVQKNR NRREKEIAYH SLQTIPLNPK EPWDREMDYD  660
DSLTPDIPSQ QPPEESITEP QESLYDRRTA AGAATSSSSQ SSSMEPDFEL LAALLKNPDL  720
LYALTSGNPG NLAGPDMVKL LDVIKTGASN SSSISYKKVE EKVEVSLPSP TPSTNPGMSG  780
WGQEAIRNPF SRQSQVGAAV ARMSTQLPVA SMQWQSSNEQ SIPRHAPSAY NSHTLAHTER  840
QQQQQPMQSR LLHQSQHLHQ QQQPILTNSY AVRESVGQMG TATSASWRSQ QSQNSYYTPQ  900
ANGIASASSY QVSEQYMSNN PGFESWSPDH SPSRNHPNMR GQQQQQPSRK HDSSHPYWNQ  960
NRRWR

Functional Description ? help Back to Top
Source	Description
UniProt	Seems to play a role in the regulation of flowering time in the autonomous flowering pathway by repressing FLOWERING LOCUS C expression. {ECO:0000269\|PubMed:10363371}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676732798

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK226746	0.0	AK226746.1 Arabidopsis thaliana mRNA for luminidependens protein, complete cds, clone: RAFL07-75-C15.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018471086.1	0.0	PREDICTED: homeobox protein LUMINIDEPENDENS isoform X1
Swissprot	Q38796	0.0	LUMI_ARATH; Homeobox protein LUMINIDEPENDENS
TrEMBL	D7M3G5	0.0	D7M3G5_ARALL; Uncharacterized protein
STRING	scaffold_604015.1	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10876	24	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02560.2	0.0	HB-other family protein

Publications ? help Back to Top
Chakrabortee S, et al. Luminidependens (LD) is an Arabidopsis protein with prion behavior. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(21): p. 6065-70 [PMID:27114519]