PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676732772
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family C2H2
Protein Properties Length: 403aa    MW: 44572.2 Da    PI: 9.4891
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676732772genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.61.1e-0584106123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                ++C++C+k F r  nL+ H r H
  676732772  84 FVCEICNKGFQRDQNLQLHRRGH 106
                89*******************88 PP
2zf-C2H212.80.00035161183123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                +kC++C+k +  +s+ k H +++
  676732772 161 WKCEKCSKFYAVQSDWKAHTKVC 183
                58*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.04E-683106No hitNo description
Gene3DG3DSA:3.30.160.601.3E-583106IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.94984106IPR007087Zinc finger, C2H2
PfamPF121716.1E-584106IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.01784106IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028086106IPR007087Zinc finger, C2H2
SMARTSM00355310126156IPR015880Zinc finger, C2H2-like
SuperFamilySSF576677.04E-6156181No hitNo description
SMARTSM00355180161181IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MDMFSSRKWS YKPSSLSAEA SASSGDTLSA IQDLNGLNSA ISSRFCTHTD TQISKKRRGV  60
PGNPDPDAEV IALSPKALLA TNRFVCEICN KGFQRDQNLQ LHRRGHNLPW KLKQKNSKEQ  120
QRKKVYVCPE INCVHHHPSR ALGDLTGIKK HFCRKHGEKK WKCEKCSKFY AVQSDWKAHT  180
KVCGTREYRC DCGTLFSRKD SFITHRAFCD ALAEESARVM SSPPSRPNPN FQDRHYMLNK  240
SSSSSLLFTS SLYPPHSTAA ASSSTTAALS ATALLQKATS LSSASFGGGG QTRSIGHHRH  300
MPTVNELLGV DRVMMTTPSL SSEYDQLVVD GLTSTWQKAD RLTRDFLGLT GHGVHLSVRP  360
GDMLEYAGGV SFPMSAYDTE SNNHESSSFQ KAYDLGFSGP HNM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C5e-35157221367Zinc finger protein JACKDAW
5b3h_F5e-35157221367Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1110123KLKQKNSKEQQRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676732772
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013619493.10.0PREDICTED: protein indeterminate-domain 12
RefseqXP_013674575.10.0protein indeterminate-domain 12
SwissprotO227590.0IDD12_ARATH; Protein indeterminate-domain 12
TrEMBLA0A0D3ASE20.0A0A0D3ASE2_BRAOL; Uncharacterized protein
TrEMBLA0A3P6DPP50.0A0A3P6DPP5_BRAOL; Uncharacterized protein
STRINGBostr.2983s0191.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02670.10.0indeterminate(ID)-domain 12
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]