PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676732644 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | MYB | ||||||||
Protein Properties | Length: 522aa MW: 58094.8 Da PI: 5.9726 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.2 | 2.9e-16 | 34 | 81 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W+ Ed++l+d+v+q+G g+W+++ ++ + R++k+c++rw ++l 676732644 34 KGPWSSAEDDILIDYVNQHGEGNWNAVQKHTSLFRCGKSCRLRWANHL 81 79******************************************9986 PP | |||||||
2 | Myb_DNA-binding | 41.7 | 2.8e-13 | 87 | 136 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46 +g++T +E+el+v++++++G++ W++ a++ gRt++++k++w++ 676732644 87 KGAFTLQEEELIVELHAKMGNR-WARMAAHRVfpsqlPGRTDNEIKNYWNT 136 799*******************.*******9999***************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.37 | 29 | 81 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.81E-26 | 32 | 134 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.4E-14 | 33 | 83 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.8E-14 | 34 | 81 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.8E-23 | 35 | 88 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.03E-10 | 36 | 81 | No hit | No description |
PROSITE profile | PS51294 | 20.727 | 82 | 142 | IPR017930 | Myb domain |
SMART | SM00717 | 9.8E-13 | 86 | 140 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.0E-11 | 87 | 136 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.0E-22 | 89 | 141 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.58E-9 | 89 | 136 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009789 | Biological Process | positive regulation of abscisic acid-activated signaling pathway | ||||
GO:0043068 | Biological Process | positive regulation of programmed cell death | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0045926 | Biological Process | negative regulation of growth | ||||
GO:0048235 | Biological Process | pollen sperm cell differentiation | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 522 aa Download sequence Send to blast |
MSYSSTESDH NESPFTDDGS DCRRSRWEAN ALKKGPWSSA EDDILIDYVN QHGEGNWNAV 60 QKHTSLFRCG KSCRLRWANH LRPNLKKGAF TLQEEELIVE LHAKMGNRWA RMAAHRVFPS 120 QLPGRTDNEI KNYWNTRIKR RQRAGLPLYP PEMHVQVLEW SQEYTKSRIL GRERSHQDFL 180 QLGSCESDVF FDSLNFVPDV VPAASDLACK LLGDGTSSPR YGNFMPSSKR LRGSESLYPG 240 CSSTLKEDIP SPEHFQNTAA QQKSSTTCSF SVPCDVDHPS YGKQHVPVMI PDSHTLTDGL 300 VPTSNPTSGE VKLELPSFQY SEATSDQWKD SASPPHSELL DPFDAYIQSP PQTGRKESDF 360 FSSYNTGLLD MLLLEANYRN NSTKNSLYKS CASPTPSPDV GEFNVSQIKS EEFGNSLKSL 420 VHSGISIPTQ HNADGIPLRQ REKERKPVLD ITRPDVWLAS SWLDHGLGIV KETGSMSDAL 480 AVLLGDDVGN DYVQMSIGAS SGVVGSCAWS NMPPVCQMTE LP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-27 | 32 | 141 | 5 | 107 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator of alpha-amylase expression that binds to 5'-CAACTGTC-3' motif in target gene promoter (PubMed:11743113). Positive regulator of abscisic acid (ABA) responses leading to growth arrest during seed germination (PubMed:17217461). In vegetative tissues, inhibits growth by reducing cell proliferation. Promotes the expression of aleurone-related genes (e.g. CP1, CP, GASA1, BXL1 and BXL2) in seeds. Together with MYB65 and MYB101, promotes the programmed cell death (PCD) the vacuolation of protein storage vacuoles (PSVs) in the aleurone layers during seed germination (PubMed:20699403). Binds to a GARE site (GA-response element) in the LEAFY promoter, essential for its gibberellic acid (GA)-mediated induction (PubMed:15226253). Together with MYB65, facilitates anther and tapetum development (PubMed:15722475). {ECO:0000269|PubMed:11743113, ECO:0000269|PubMed:15226253, ECO:0000269|PubMed:15722475, ECO:0000269|PubMed:17217461, ECO:0000269|PubMed:20699403}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00490 | DAP | Transfer from AT5G06100 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676732644 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Accumulates at the shoot apex upon the transition from short- to long-day photoperiods leading to flowering and after gibberellins (GAs) treatment (PubMed:11743113). Repressed by microRNA159 (miR159a and miR159b) in vegetative tissues (PubMed:15226253, PubMed:20699403, PubMed:17916625). Specific expression in floral organs and in the shoot apices is regulated via miR159-mediated degradation (PubMed:15722475). Repressed in germinating seeds by miR159-mediated cleavage in an abscisic acid (ABA) and ABI3-dependent manner, probably to desensitize hormone signaling during seedling stress responses (PubMed:17217461, PubMed:18305205). Slightly induced by ethylene and cytokinins (PubMed:9839469). {ECO:0000269|PubMed:11743113, ECO:0000269|PubMed:15226253, ECO:0000269|PubMed:15722475, ECO:0000269|PubMed:17217461, ECO:0000269|PubMed:17916625, ECO:0000269|PubMed:18305205, ECO:0000269|PubMed:20699403, ECO:0000269|PubMed:9839469}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006399071.1 | 0.0 | transcription factor MYB33 isoform X1 | ||||
Swissprot | Q8W1W6 | 0.0 | MYB33_ARATH; Transcription factor MYB33 | ||||
TrEMBL | V4LA66 | 0.0 | V4LA66_EUTSA; Uncharacterized protein | ||||
STRING | Bostr.13129s0364.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3802 | 28 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06100.3 | 0.0 | myb domain protein 33 |