PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676732638 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | LBD | ||||||||
Protein Properties | Length: 182aa MW: 20640.2 Da PI: 6.0979 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 118.3 | 4.4e-37 | 7 | 106 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +C aCk+lrrkC++dCv++pyf eq +++fa+vhk+FGasnv+k l +lp ++r++a+ ++ yeA r+ dPvyG+v++i++lqqq+ +l++e++ l++ 676732638 7 SCGACKFLRRKCNSDCVFSPYFSYEQaSSHFAAVHKVFGASNVSKHLLHLPLHQRSAAAITISYEALSRMCDPVYGCVAHIFALQQQVVTLQEEIEFLGT 106 6***********************9978******************************************************************998765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 21.809 | 6 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.3E-34 | 7 | 103 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 182 aa Download sequence Send to blast |
MAGHGSSCGA CKFLRRKCNS DCVFSPYFSY EQASSHFAAV HKVFGASNVS KHLLHLPLHQ 60 RSAAAITISY EALSRMCDPV YGCVAHIFAL QQQVVTLQEE IEFLGTHMAN FSYSTEIRSQ 120 PNNMPEFLNQ MTMDTTGFID DTLLNNDDGR NCLEGFFTNP EEVLVNHPWF QNMDHYYYAP 180 QH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-34 | 3 | 125 | 7 | 127 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-34 | 3 | 125 | 7 | 127 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676732638 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. {ECO:0000269|PubMed:17259263}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018444637.1 | 1e-123 | PREDICTED: LOB domain-containing protein 33 | ||||
Swissprot | Q9LHS8 | 1e-109 | LBD33_ARATH; LOB domain-containing protein 33 | ||||
TrEMBL | A0A291LR26 | 1e-121 | A0A291LR26_BRARR; Transcription factor LBD33 | ||||
TrEMBL | M4CY64 | 1e-121 | M4CY64_BRARP; Uncharacterized protein | ||||
STRING | Bra009161.1-P | 1e-122 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM108 | 28 | 359 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06080.1 | 1e-111 | LOB domain-containing protein 33 |
Publications ? help Back to Top | |||
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