PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676732558

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

NF-YA

Protein Properties

Length: 279aa MW: 30747.6 Da PI: 9.128

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676732558	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	89.8	3.5e-28	141	196	2	58
CBFB_NFYA 2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 ++YVN+KQy++I++RRq+Rak+ ++k+ + ++py+h+SRh hA+rRpRgsgGrF 676732558 141 GTIYVNSKQYHGIIRRRQSRAKAVLKNKM-SSRKQPYMHHSRHLHAMRRPRGSGGRF 196 689************************.99**********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	2.0E-31	138	199	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	34.373	139	199	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	1.8E-24	142	196	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	1.9E-20	142	164	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	1.9E-20	173	196	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 279 aa Download sequence Send to blast
MQTECCKERD GLFSPPRTSS WWSAFGSTPL ISDSFSGDAS DSLAGVKVVT PETDQEGVDK 60 QISATLFSFS HGGGKSSREV SKPHVALAMQ SACFEFGFAQ PTMYTKHPHL DQYYGVVSGY 120 GSQIFPGRVM LPLNMETEED GTIYVNSKQY HGIIRRRQSR AKAVLKNKMS SRKQPYMHHS 180 RHLHAMRRPR GSGGRFLNTK KADAALTSKP SDSQNSAVFH PETRSIDSSR ETYGPNVSGS 240 DVLSMDYFLS SSVHSLGDMV IPNKWTATAM DIGCCNLKT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	1e-15	143	210	5	72	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
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Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676732558

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006399124.1	1e-149	nuclear transcription factor Y subunit A-10 isoform X1
Refseq	XP_024011163.1	1e-149	nuclear transcription factor Y subunit A-10 isoform X1
Swissprot	Q8LFU0	1e-139	NFYAA_ARATH; Nuclear transcription factor Y subunit A-10
TrEMBL	V4LDW7	1e-148	V4LDW7_EUTSA; Uncharacterized protein
STRING	XP_006399124.1	1e-149	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3008	27	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06510.2	1e-142	nuclear factor Y, subunit A10

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722] Zhang M,Hu X,Zhu M,Xu M,Wang L Transcription factors NF-YA2 and NF-YA10 regulate leaf growth via auxin signaling in Arabidopsis. Sci Rep, 2017. 7(1): p. 1395 [PMID:28469131]