PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676732494
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family G2-like
Protein Properties Length: 357aa    MW: 40175.7 Da    PI: 6.7427
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676732494genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like1023.8e-32194248155
    G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                k+r+rWt++LHe+Fve+v++LGG++kAtPk+il+lm+ +gLt+ hvkSHLQkYR+
  676732494 194 KTRIRWTQDLHEKFVECVNRLGGADKATPKAILKLMDSEGLTIFHVKSHLQKYRI 248
                68****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.42191251IPR017930Myb domain
SuperFamilySSF466893.94E-17193248IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-28193249IPR009057Homeodomain-like
TIGRFAMsTIGR015571.8E-23194249IPR006447Myb domain, plants
PfamPF002491.3E-8198247IPR001005SANT/Myb domain
PfamPF143792.9E-20261308IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MDNINFETSN ASQGSRLQSQ PQPPQPFNLQ DVNMIHYNQS SPWTIDTFSG FTPYDCTANQ  60
SFPVQCSSSK PYPPSFHPYH HQSSDSPSLD QSQSMVPIQP LQDQHLKPLY QRSCANDFTV  120
TNASSASYSL SFEASQDPQE LCRRTYSNSN VTQLNFSSSD HQPKQTHPRF SSPSSFSTHG  180
GSMAPNCGTV IGNKTRIRWT QDLHEKFVEC VNRLGGADKA TPKAILKLMD SEGLTIFHVK  240
SHLQKYRIAK YIPDSQEGSG VQIKEALQLQ LDVQRHLHEQ LEIQRNLQLR IEEQGKQLKI  300
MIEQQQKTKE CLLKTPNAEA SLSLSDCDHS PPPFSIQDAE ALMLTSYGDT QFQPKIS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A7e-24194251259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B7e-24194251259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A7e-24194251259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C7e-24194251259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D7e-24194251259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F7e-24194251259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H7e-24194251259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J7e-24194251259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap676732494
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2266440.0AK226644.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL07-39-G11.
GenBankBT0126580.0BT012658.1 Arabidopsis thaliana At5g06800 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018468228.10.0PREDICTED: myb family transcription factor PHL5-like
SwissprotQ0WVU30.0PHL5_ARATH; Myb family transcription factor PHL5
TrEMBLA0A3P6AKJ90.0A0A3P6AKJ9_BRACM; Uncharacterized protein
STRINGBra028717.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54762748
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06800.11e-172G2-like family protein