PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676732492
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family G2-like
Protein Properties Length: 819aa    MW: 94494.3 Da    PI: 8.1818
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676732492genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like92.82.9e-2982136155
    G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                k+r++Wt++LH++Fve+v++LGG+ kAtPk+il+lm  + Lt++h+kSHLQkYR+
  676732492  82 KTRIKWTSDLHDNFVECVNHLGGPMKATPKRILKLMRTHELTIYHIKSHLQKYRT 136
                68****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.01279139IPR017930Myb domain
SuperFamilySSF466891.36E-1381136IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.2E-2581136IPR009057Homeodomain-like
TIGRFAMsTIGR015572.8E-2382136IPR006447Myb domain, plants
PfamPF002499.2E-786135IPR001005SANT/Myb domain
SMARTSM0073340422452IPR003690Transcription termination factor, mitochondrial/chloroplastic
SMARTSM0073334457488IPR003690Transcription termination factor, mitochondrial/chloroplastic
PfamPF025365.2E-7511678IPR003690Transcription termination factor, mitochondrial/chloroplastic
SMARTSM00733340561592IPR003690Transcription termination factor, mitochondrial/chloroplastic
SMARTSM00733370678708IPR003690Transcription termination factor, mitochondrial/chloroplastic
PfamPF025363.5E-17681796IPR003690Transcription termination factor, mitochondrial/chloroplastic
SMARTSM007330.13713744IPR003690Transcription termination factor, mitochondrial/chloroplastic
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003690Molecular Functiondouble-stranded DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 819 aa     Download sequence    Send to blast
MKFGRRNASD NDSSHERCRE HSSHCCKCYD ISEIFSADTR RTTSLSKQSL ECVETHISTD  60
PSAKFSSCES PSEFTSSSSS IKTRIKWTSD LHDNFVECVN HLGGPMKATP KRILKLMRTH  120
ELTIYHIKSH LQKYRTLTHV QNAIQGTSIK EEEIHLEGSR IKEFMRLQDE MGQHLQEQLE  180
MQRELYLLVE EQNKQLHEMM TYKKRKNSTE LSETSPPPSH ASPVFSGTDT SDDPWRWQMN  240
CSELRSETKR FESDKSRKRF RKLSIENPSK LLTATTQTPR SFATQRTAQA SSEKSSVRRT  300
RNGIKVTPTI RKMAEEAMLD YFYSTRSLQY MVAESMSKNS PIFIDNLLKK VNCVSASDVN  360
QSITKHLRFH PVNEFEPFLE SSGLKPTEYT HLIPSGELFL NELLLENHHV LCYCGVDPKK  420
IGKIFEEARE VFGYETGVLA SKIKGYEDLG FSRLFLSKLI VCCPSILIGV TDMELVQVME  480
LLKTIGVDSD WVTKNLLEEA CYDWSSVHRV LSLLREISND ENELCGLIRQ HPRLIFENSG  540
KWTLILSGFE TKLGSSRREL YSLFQKLPQI QVEKCVSNLR RCFLFLQEID MEDDEILKVF  600
RSHSWWIGSR MLKKTSSLLV NLKAYKRRVC QVVKDNPEEM KKWTMGSKVQ PLPGTEVYLD  660
SKAMKTQFLL DLGYEENTEE MERVAKSFRG RGSELRERFD VLVSLGLDEK DVKDMVKASP  720
DILTQACDVL ETKVKYLVDE LGYPLSTLVT FPSCLKFTLE RMKLRFAMFS WLQARGKADP  780
KLAISTVLAC SDKDFAKYFV SRHPDGPKHF EDLRKKELF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A1e-1782136256Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B1e-1782136256Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A1e-1782136256Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C1e-1782136256Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D1e-1782136256Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F1e-1782136256Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H1e-1782136256Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J1e-1782136256Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1621627LKAYKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMap676732492
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018445826.10.0PREDICTED: transcription termination factor MTEF18, mitochondrial-like
TrEMBLA0A3P6CQD50.0A0A3P6CQD5_BRACM; Uncharacterized protein
STRINGBra009230.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM512923
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06800.13e-31G2-like family protein