PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676731848
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family ERF
Protein Properties Length: 162aa    MW: 18089.1 Da    PI: 6.2629
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676731848genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP226.61.5e-082143124
        AP2  1 sgykGVrwdkkrgrWvAeIrdpse 24
               s y+GVr +k +g+Wv+eIr+p +
  676731848 21 STYRGVRKRK-WGKWVSEIREPGT 43
               56*****999.**********844 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541715.1E-72160IPR016177DNA-binding domain
CDDcd000181.66E-122161No hitNo description
SMARTSM003801.7E-82265IPR001471AP2/ERF domain
PROSITE profilePS5103210.2312256IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.4E-92243IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MAGLSSSSNN ERYDGQAGIP STYRGVRKRK WGKWVSEIRE PGTKNPFHFR GREARLNFPE  60
LVSSLPRPAD SSSDSIRMAA HEATLCLRTE PVESAMQVDT SSSSNAGPTM VRLSPREIQA  120
INESTLGSPT MLMHSTDESM GFTNYMGMNV WDTYQTDSLW DY
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00227DAPTransfer from AT1G71450Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676731848
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018454637.11e-102PREDICTED: ethylene-responsive transcription factor ERF021
SwissprotQ9C9I21e-81ERF21_ARATH; Ethylene-responsive transcription factor ERF021
TrEMBLA0A3P6BKD64e-98A0A3P6BKD6_BRACM; Uncharacterized protein
TrEMBLM4DI094e-98M4DI09_BRARP; Uncharacterized protein
STRINGBra016136.1-P7e-99(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71450.15e-84ERF family protein