PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676731456 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | bHLH | ||||||||
Protein Properties | Length: 257aa MW: 28147.5 Da PI: 4.3232 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 15.5 | 3.1e-05 | 205 | 241 | 13 | 54 |
HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 13 RdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R+++++ + Lr+++P + ++ a++L +Av+Y+ksL 676731456 205 RKKMKKMMGMLRKIVPGG-----EQMNTASVLDEAVQYLKSL 241 899*************95.....68***************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 10.398 | 192 | 241 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 0.0049 | 199 | 247 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.9E-7 | 205 | 248 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.58E-8 | 205 | 251 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MGDGNMNVPY ASASSFDALF PPCAKLPYHG VELQPSAVCP KNFVIFDQTY DRSQVMYHPE 60 LTHRLVNSPS LNGLATTFQN EYVGESFGNY GQQESYGNYG QQESYGNYGQ QESYGNYGQP 120 EVSTSHQEDP NEIDALLSAD EDYEDDDDAD ENGGDSEEVS TARNSSREYG NTSAESCCSS 180 YGYKSSRSKQ SLSGSASCNN DGKGRKKMKK MMGMLRKIVP GGEQMNTASV LDEAVQYLKS 240 LKIEAQKLGV GNFSNQS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 203 | 211 | GRKKMKKMM |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676731456 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK353252 | 1e-144 | AK353252.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-23-J23. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010499513.2 | 1e-120 | PREDICTED: transcription factor bHLH144-like | ||||
Swissprot | Q9ASX9 | 1e-111 | BH144_ARATH; Transcription factor bHLH144 | ||||
TrEMBL | R0GKS4 | 1e-113 | R0GKS4_9BRAS; Uncharacterized protein | ||||
STRING | XP_006303619.1 | 1e-113 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6195 | 16 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G29950.2 | 9e-95 | bHLH family protein |
Publications ? help Back to Top | |||
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