PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676731412
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family MYB
Protein Properties Length: 398aa    MW: 44992.4 Da    PI: 6.9814
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676731412genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.31.1e-101446134
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkg 34
                     +g+WT+eEd++l+ +++++G g+W++ +++ g +
        676731412 14 KGPWTPEEDQKLLAYIEEHGHGSWRSLPEKAG-N 46
                     79***************************999.5 PP
2Myb_DNA-binding52.11.5e-16105150148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T +E++ +++++++lG++ W++Ia +++ +Rt++++k++w+++l
        676731412 105 RGKFTGQEEQTIIQLHALLGNR-WSAIATHLP-KRTDNEIKNYWNTHL 150
                      89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.9E-24544IPR009057Homeodomain-like
SuperFamilySSF466892.73E-8945IPR009057Homeodomain-like
PROSITE profilePS5129410.112958IPR017930Myb domain
SMARTSM007172.6E-713101IPR001005SANT/Myb domain
PfamPF002495.0E-91446IPR001005SANT/Myb domain
CDDcd001678.97E-71699No hitNo description
Gene3DG3DSA:1.10.10.606.9E-2482102IPR009057Homeodomain-like
SuperFamilySSF466893.34E-2185158IPR009057Homeodomain-like
PROSITE profilePS5129425.871100154IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-26103155IPR009057Homeodomain-like
SMARTSM007177.4E-17104152IPR001005SANT/Myb domain
PfamPF002499.1E-16105150IPR001005SANT/Myb domain
CDDcd001671.45E-11107150No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010091Biological Processtrichome branching
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MGRSPCCDKS GLKKGPWTPE EDQKLLAYIE EHGHGSWRSL PEKAGNLHIL CSCLFHKPHI  60
YFFFIIIYLS PNLLSDFFQL DIGLQRCGKS CRLRWTNYLR PDIKRGKFTG QEEQTIIQLH  120
ALLGNRWSAI ATHLPKRTDN EIKNYWNTHL KKRLVKMGID PVTHKHKNET LLSSTGQSKN  180
AATLSHMAQW ESARLEAEAR LARESKLLHL QHYQNNSNKN LNKPAPNHCF SHKATTNWTK  240
PNEGHGDQQL ESPTSTVTFS ENLPLMIMPL GIPTEENRST NSRENNNESS ELPNMIEFAV  300
SSSTSSDVTL VKDSEHDWMR QINCPTEGIE EGFTSLLLGD SVDRSLSTGK NVDANAVSFA  360
GAVAGNESDY SYYEDNKNYW NSILNLVDSS PSDSPTMF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-21121545108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtFunctions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269|PubMed:18805951, ECO:0000269|PubMed:21070410, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676731412
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF2493090.0AF249309.1 Arabidopsis thaliana putative transcription factor (MYB106) mRNA, complete cds.
GenBankAY5195810.0AY519581.1 Arabidopsis thaliana MYB transcription factor (At3g01140) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020886322.10.0myb-related protein Hv1
SwissprotQ9LE630.0MY106_ARATH; Transcription factor MYB106
TrEMBLD7LAI80.0D7LAI8_ARALL; Uncharacterized protein
STRINGBostr.1460s0105.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01140.11e-173myb domain protein 106