PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676731394 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 468aa MW: 52616.8 Da PI: 5.7844 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 53.5 | 4e-17 | 269 | 320 | 5 | 56 |
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ eq+++Le+ Fe +++ e++ +LAk lg++ rq+ +WFqNrRa++k 676731394 269 KRLQLEQVKALEKSFELGNKLEPERKIQLAKALGMQPRQIAIWFQNRRARWK 320 457789*********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 122.6 | 1.9e-39 | 266 | 357 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 ekk+rl+ eqvk+LE+sFe +kLeperK +la++Lg+qprq+a+WFqnrRAR+kt+qlE+dy++Lk+++++lk++n++L +++++L +e++ 676731394 266 EKKKRLQLEQVKALEKSFELGNKLEPERKIQLAKALGMQPRQIAIWFQNRRARWKTRQLERDYDSLKKQFESLKSDNDSLLAHNKKLLAEVM 357 69*************************************************************************************99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54928 | 2.33E-9 | 6 | 79 | IPR012677 | Nucleotide-binding alpha-beta plait domain |
Pfam | PF00076 | 1.1E-4 | 10 | 72 | IPR000504 | RNA recognition motif domain |
Gene3D | G3DSA:3.30.70.330 | 5.1E-7 | 10 | 75 | IPR012677 | Nucleotide-binding alpha-beta plait domain |
SuperFamily | SSF46689 | 4.28E-18 | 262 | 324 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 4.6E-16 | 265 | 326 | IPR001356 | Homeobox domain |
PROSITE profile | PS50071 | 16.018 | 266 | 322 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.09E-16 | 267 | 323 | No hit | No description |
Pfam | PF00046 | 2.4E-14 | 268 | 320 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 7.4E-18 | 270 | 330 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 7.1E-5 | 293 | 302 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 297 | 320 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 7.1E-5 | 302 | 318 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 3.5E-15 | 323 | 362 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0000166 | Molecular Function | nucleotide binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 468 aa Download sequence Send to blast |
MYPCGYVAEV TNLSPQATEK DVHSFFSHCG IVELVEITGS QGDGDALTAY VTFRDAYALD 60 MALLLTGATI VDQTVWISMY GVYLHESNDL TREGDYTVTI QNVLLLAIKV TQSHADAFAA 120 SPGEAVTIAQ QVVKTMLAKG YVLSKDVIGK AKALDESQRF SSVVANKLAE ISHYIGLTQN 180 IQSNAAAGLR LEMAFPQHGF MFQQLHEDNS HDQLPSCPPP PPHLFNGGGN YMMNRSMSLT 240 NVQEDHHQSV DEENLSDDGS HMMLGEKKKR LQLEQVKALE KSFELGNKLE PERKIQLAKA 300 LGMQPRQIAI WFQNRRARWK TRQLERDYDS LKKQFESLKS DNDSLLAHNK KLLAEVMALK 360 NNEAIIIKRE PEASWSNNGS TDNSSDLNLE MPRDTTTTHV NTIKDLFPSS IRSSTHHHDH 420 DDDGHHQDNE MVQEESFCNM FTGIDETTSA GYWAWSDPNH NHHHHQFN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00322 | DAP | Transfer from AT3G01220 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676731394 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. {ECO:0000269|PubMed:12644682}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK228890 | 0.0 | AK228890.1 Arabidopsis thaliana mRNA for putative homeobox-leucine zipper protein, complete cds, clone: RAFL16-20-K05. | |||
GenBank | AY087631 | 0.0 | AY087631.1 Arabidopsis thaliana clone 3722 mRNA, complete sequence. | |||
GenBank | BT029221 | 0.0 | BT029221.1 Arabidopsis thaliana At3g01220 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010485524.1 | 1e-180 | PREDICTED: homeobox-leucine zipper protein ATHB-20-like | ||||
Swissprot | Q8LAT0 | 1e-175 | ATB20_ARATH; Homeobox-leucine zipper protein ATHB-20 | ||||
TrEMBL | A0A1J3CZL5 | 0.0 | A0A1J3CZL5_NOCCA; Homeobox-leucine zipper protein ATHB-20 | ||||
STRING | Bostr.1460s0094.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3095 | 26 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01220.1 | 1e-168 | homeobox protein 20 |