PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676731394
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family HD-ZIP
Protein Properties Length: 468aa    MW: 52616.8 Da    PI: 5.7844
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676731394genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox53.54e-17269320556
                SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox   5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 +++ eq+++Le+ Fe  +++  e++ +LAk lg++ rq+ +WFqNrRa++k
  676731394 269 KRLQLEQVKALEKSFELGNKLEPERKIQLAKALGMQPRQIAIWFQNRRARWK 320
                457789*********************************************9 PP

2HD-ZIP_I/II122.61.9e-39266357192
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                  ekk+rl+ eqvk+LE+sFe  +kLeperK +la++Lg+qprq+a+WFqnrRAR+kt+qlE+dy++Lk+++++lk++n++L +++++L +e++
    676731394 266 EKKKRLQLEQVKALEKSFELGNKLEPERKIQLAKALGMQPRQIAIWFQNRRARWKTRQLERDYDSLKKQFESLKSDNDSLLAHNKKLLAEVM 357
                  69*************************************************************************************99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF549282.33E-9679IPR012677Nucleotide-binding alpha-beta plait domain
PfamPF000761.1E-41072IPR000504RNA recognition motif domain
Gene3DG3DSA:3.30.70.3305.1E-71075IPR012677Nucleotide-binding alpha-beta plait domain
SuperFamilySSF466894.28E-18262324IPR009057Homeodomain-like
SMARTSM003894.6E-16265326IPR001356Homeobox domain
PROSITE profilePS5007116.018266322IPR001356Homeobox domain
CDDcd000863.09E-16267323No hitNo description
PfamPF000462.4E-14268320IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.607.4E-18270330IPR009057Homeodomain-like
PRINTSPR000317.1E-5293302IPR000047Helix-turn-helix motif
PROSITE patternPS000270297320IPR017970Homeobox, conserved site
PRINTSPR000317.1E-5302318IPR000047Helix-turn-helix motif
PfamPF021833.5E-15323362IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0000166Molecular Functionnucleotide binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MYPCGYVAEV TNLSPQATEK DVHSFFSHCG IVELVEITGS QGDGDALTAY VTFRDAYALD  60
MALLLTGATI VDQTVWISMY GVYLHESNDL TREGDYTVTI QNVLLLAIKV TQSHADAFAA  120
SPGEAVTIAQ QVVKTMLAKG YVLSKDVIGK AKALDESQRF SSVVANKLAE ISHYIGLTQN  180
IQSNAAAGLR LEMAFPQHGF MFQQLHEDNS HDQLPSCPPP PPHLFNGGGN YMMNRSMSLT  240
NVQEDHHQSV DEENLSDDGS HMMLGEKKKR LQLEQVKALE KSFELGNKLE PERKIQLAKA  300
LGMQPRQIAI WFQNRRARWK TRQLERDYDS LKKQFESLKS DNDSLLAHNK KLLAEVMALK  360
NNEAIIIKRE PEASWSNNGS TDNSSDLNLE MPRDTTTTHV NTIKDLFPSS IRSSTHHHDH  420
DDDGHHQDNE MVQEESFCNM FTGIDETTSA GYWAWSDPNH NHHHHQFN
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00322DAPTransfer from AT3G01220Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676731394
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. {ECO:0000269|PubMed:12644682}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2288900.0AK228890.1 Arabidopsis thaliana mRNA for putative homeobox-leucine zipper protein, complete cds, clone: RAFL16-20-K05.
GenBankAY0876310.0AY087631.1 Arabidopsis thaliana clone 3722 mRNA, complete sequence.
GenBankBT0292210.0BT029221.1 Arabidopsis thaliana At3g01220 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010485524.11e-180PREDICTED: homeobox-leucine zipper protein ATHB-20-like
SwissprotQ8LAT01e-175ATB20_ARATH; Homeobox-leucine zipper protein ATHB-20
TrEMBLA0A1J3CZL50.0A0A1J3CZL5_NOCCA; Homeobox-leucine zipper protein ATHB-20
STRINGBostr.1460s0094.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30952666
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01220.11e-168homeobox protein 20