PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676731350 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 275aa MW: 31374.6 Da PI: 4.6291 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 64 | 2.2e-20 | 66 | 119 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t+eq++ Le+ Fe ++++ +++++LAkklgL+ rqV vWFqNrRa++k 676731350 66 KKRRLTTEQVHLLEKSFETENKLEPDRKTQLAKKLGLQPRQVAVWFQNRRARWK 119 56789************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 132.4 | 1.7e-42 | 65 | 157 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 ekkrrl++eqv+lLE+sFe+e+kLep+rK++la++LglqprqvavWFqnrRAR+ktkqlE+d++ Lk++yd+l ++ +++ ke+++Lr+e+++ 676731350 65 EKKRRLTTEQVHLLEKSFETENKLEPDRKTQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDFDLLKSTYDQLLSNFDSVVKENDKLRSEVTS 157 69**************************************************************************************99975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.99E-20 | 50 | 123 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 18.091 | 61 | 121 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.3E-19 | 64 | 125 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 2.2E-17 | 66 | 119 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.55E-18 | 66 | 122 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.0E-21 | 67 | 128 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 4.1E-6 | 92 | 101 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 96 | 119 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 4.1E-6 | 101 | 117 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 1.0E-16 | 121 | 163 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001558 | Biological Process | regulation of cell growth | ||||
GO:0009637 | Biological Process | response to blue light | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 275 aa Download sequence Send to blast |
MESNSFFFDP SASHGNMFFL GNLNPVGQGA KSMMMNMEES SKRRPFFSSP EDLYDEEYYD 60 DQTPEKKRRL TTEQVHLLEK SFETENKLEP DRKTQLAKKL GLQPRQVAVW FQNRRARWKT 120 KQLERDFDLL KSTYDQLLSN FDSVVKENDK LRSEVTSLAE KVQAKEETAN EPPGQVPATN 180 QLDPVNMNRF EPAIKIEDRL SSGSVGSAVL DEDAPQLLDS CDSYFPSIVP IHSEEDNNNN 240 NNGSDNDHSC FADVFVPTTS PSHHHGESLG FWGWT |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 113 | 121 | RRARWKTKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:8535134}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00323 | DAP | Transfer from AT3G01470 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676731350 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK352854 | 0.0 | AK352854.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-08-H09. | |||
GenBank | AK353535 | 0.0 | AK353535.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-50-D05. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006408508.2 | 1e-179 | homeobox-leucine zipper protein HAT5 | ||||
Swissprot | Q02283 | 1e-157 | HAT5_ARATH; Homeobox-leucine zipper protein HAT5 | ||||
TrEMBL | E4MWF7 | 1e-178 | E4MWF7_EUTHA; mRNA, clone: RTFL01-08-H09 | ||||
STRING | Bostr.1460s0066.1.p | 1e-174 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8884 | 27 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01470.1 | 1e-146 | homeobox 1 |
Publications ? help Back to Top | |||
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