PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676731350
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family HD-ZIP
Protein Properties Length: 275aa    MW: 31374.6 Da    PI: 4.6291
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676731350genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox642.2e-2066119356
                --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                k++++t+eq++ Le+ Fe ++++  +++++LAkklgL+ rqV vWFqNrRa++k
  676731350  66 KKRRLTTEQVHLLEKSFETENKLEPDRKTQLAKKLGLQPRQVAVWFQNRRARWK 119
                56789************************************************9 PP

2HD-ZIP_I/II132.41.7e-4265157193
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                  ekkrrl++eqv+lLE+sFe+e+kLep+rK++la++LglqprqvavWFqnrRAR+ktkqlE+d++ Lk++yd+l ++ +++ ke+++Lr+e+++
    676731350  65 EKKRRLTTEQVHLLEKSFETENKLEPDRKTQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDFDLLKSTYDQLLSNFDSVVKENDKLRSEVTS 157
                  69**************************************************************************************99975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.99E-2050123IPR009057Homeodomain-like
PROSITE profilePS5007118.09161121IPR001356Homeobox domain
SMARTSM003891.3E-1964125IPR001356Homeobox domain
PfamPF000462.2E-1766119IPR001356Homeobox domain
CDDcd000862.55E-1866122No hitNo description
Gene3DG3DSA:1.10.10.602.0E-2167128IPR009057Homeodomain-like
PRINTSPR000314.1E-692101IPR000047Helix-turn-helix motif
PROSITE patternPS00027096119IPR017970Homeobox, conserved site
PRINTSPR000314.1E-6101117IPR000047Helix-turn-helix motif
PfamPF021831.0E-16121163IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001558Biological Processregulation of cell growth
GO:0009637Biological Processresponse to blue light
GO:0009651Biological Processresponse to salt stress
GO:0009965Biological Processleaf morphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MESNSFFFDP SASHGNMFFL GNLNPVGQGA KSMMMNMEES SKRRPFFSSP EDLYDEEYYD  60
DQTPEKKRRL TTEQVHLLEK SFETENKLEP DRKTQLAKKL GLQPRQVAVW FQNRRARWKT  120
KQLERDFDLL KSTYDQLLSN FDSVVKENDK LRSEVTSLAE KVQAKEETAN EPPGQVPATN  180
QLDPVNMNRF EPAIKIEDRL SSGSVGSAVL DEDAPQLLDS CDSYFPSIVP IHSEEDNNNN  240
NNGSDNDHSC FADVFVPTTS PSHHHGESLG FWGWT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1113121RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:8535134}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00323DAPTransfer from AT3G01470Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676731350
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3528540.0AK352854.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-08-H09.
GenBankAK3535350.0AK353535.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-50-D05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006408508.21e-179homeobox-leucine zipper protein HAT5
SwissprotQ022831e-157HAT5_ARATH; Homeobox-leucine zipper protein HAT5
TrEMBLE4MWF71e-178E4MWF7_EUTHA; mRNA, clone: RTFL01-08-H09
STRINGBostr.1460s0066.1.p1e-174(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM88842738
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.11e-146homeobox 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ribone PA,Capella M,Arce AL,Chan RL
    A uORF Represses the Transcription Factor AtHB1 in Aerial Tissues to Avoid a Deleterious Phenotype.
    Plant Physiol., 2017. 175(3): p. 1238-1253
    [PMID:28956754]