PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676731158
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family HD-ZIP
Protein Properties Length: 697aa    MW: 78417.5 Da    PI: 6.1576
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676731158genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox573.4e-182979656
               S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox  6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
               ++t++q+++Le++F+++++p+++++++L   l+L+ +q+k+WFqN+R++ k
  676731158 29 RHTPQQIQILEAYFKECPHPDESQKQKLCIDLNLELDQIKFWFQNKRTQSK 79
               689********************************************9987 PP

2START94.22.5e-302194394206
                HHHHHHHHHHHHHC-TT-EEEE.......EXCCTTEEEEEEESSS.....SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECTT CS
      START   4 eeaaqelvkkalaeepgWvkss.......esengdevlqkfeeskv....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevissg 88 
                 +a +el ++   ee +Wvkss       ++e ++++  +++   +     ++e +++++vv+  ++ lve +ld+  +W + ++    ka+t+  + s 
  676731158 219 ASAVEELKRLFFTEEGFWVKSSidgtyviDQESYEKYSHSITH--FkrlgARVESSKDVTVVPIKATSLVEMFLDSE-KWRKLFPtivnKATTTHMLGSE 315
                567778888888899**********888866666666666533..344777**************************.***9999999999999999999 PP

                .......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXX.HH CS
      START  89 .......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlp.hw 179
                       + lq++  +l  lsplvp R+f++vR++++ ++g w+++dvS +  ++   ++    + ++pSg+li+++++ hs+v w+ehv+++ +   h 
  676731158 316 fsiiencNGLQVIWEQLHILSPLVPpREFMIVRCCQKIEEGIWIVADVSHNIVKFDHINPF---CYKRPSGCLIRTLPDAHSEVMWIEHVEVDHKPDtHR 412
                *************************************************999999986444...456*************************998768** PP

                HHHHHHHHHHHHHHHHHHHHTXXXXXX CS
      START 180 llrslvksglaegaktwvatlqrqcek 206
                ++r l+      gak+w   l+r ce+
  676731158 413 MYRELLCGNSGYGAKRWIFSLERMCER 439
                **********************99996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.7E-18779IPR009057Homeodomain-like
SuperFamilySSF466892.78E-161180IPR009057Homeodomain-like
PROSITE profilePS5007114.8192181IPR001356Homeobox domain
SMARTSM003891.9E-152385IPR001356Homeobox domain
CDDcd000865.80E-162481No hitNo description
PfamPF000469.8E-162979IPR001356Homeobox domain
PROSITE profilePS5084833.841207442IPR002913START domain
SuperFamilySSF559612.06E-22209439No hitNo description
Gene3DG3DSA:3.30.530.202.8E-7212407IPR023393START-like domain
CDDcd088753.83E-83213438No hitNo description
SMARTSM002344.9E-10216439IPR002913START domain
PfamPF018528.0E-24219439IPR002913START domain
SuperFamilySSF559611.39E-11462664No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 697 aa     Download sequence    Send to blast
MDSDDGGSPD NKHYTSINAN IKDKKIGHRH TPQQIQILEA YFKECPHPDE SQKQKLCIDL  60
NLELDQIKFW FQNKRTQSKV QDERNSNILL RRENEKFQCE NNALMETMKN VTCPTCGGPP  120
FGRNERERNL QKLRLENALL KEKRDKIAEH VSENKPQQTM VDSFPSVHGH QTFDSHTSYG  180
IISNNPSEPL ASSASPNFQN IQPQVLSQMD IMQLSETAAS AVEELKRLFF TEEGFWVKSS  240
IDGTYVIDQE SYEKYSHSIT HFKRLGARVE SSKDVTVVPI KATSLVEMFL DSEKWRKLFP  300
TIVNKATTTH MLGSEFSIIE NCNGLQVIWE QLHILSPLVP PREFMIVRCC QKIEEGIWIV  360
ADVSHNIVKF DHINPFCYKR PSGCLIRTLP DAHSEVMWIE HVEVDHKPDT HRMYRELLCG  420
NSGYGAKRWI FSLERMCERM ALSSILTIPA ADWSEVIATV EGRKSVMKLG ERMMKNFNEM  480
LTMSGKIEFP QHSKCGVRIS IRMNMEAGQP SGLVVSAASC ISVPLTPLQV FNCLANKNTR  540
HQWDVLCYGN VVSEIACVST GSSETNYITL LRPTQTTDNG IIMAQDPDKS LVMLQECHMD  600
ALGGMIVYAP LDMATMNIAA SGEVDPSDIP ILPSGFTISS DGRGSMAAED GGTLLTVAFQ  660
ILISGESTET REVSERSVDT VSSLISTTVQ RIKLLLN
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676731158
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006408322.10.0homeobox-leucine zipper protein HDG8
SwissprotQ9M9P40.0HDG8_ARATH; Homeobox-leucine zipper protein HDG8
TrEMBLV4LGW80.0V4LGW8_EUTSA; Uncharacterized protein
STRINGXP_006408322.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM127911530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03260.10.0homeodomain GLABROUS 8