PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676731158 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 697aa MW: 78417.5 Da PI: 6.1576 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57 | 3.4e-18 | 29 | 79 | 6 | 56 |
S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++t++q+++Le++F+++++p+++++++L l+L+ +q+k+WFqN+R++ k 676731158 29 RHTPQQIQILEAYFKECPHPDESQKQKLCIDLNLELDQIKFWFQNKRTQSK 79 689********************************************9987 PP | |||||||
2 | START | 94.2 | 2.5e-30 | 219 | 439 | 4 | 206 |
HHHHHHHHHHHHHC-TT-EEEE.......EXCCTTEEEEEEESSS.....SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECTT CS START 4 eeaaqelvkkalaeepgWvkss.......esengdevlqkfeeskv....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevissg 88 +a +el ++ ee +Wvkss ++e ++++ +++ + ++e +++++vv+ ++ lve +ld+ +W + ++ ka+t+ + s 676731158 219 ASAVEELKRLFFTEEGFWVKSSidgtyviDQESYEKYSHSITH--FkrlgARVESSKDVTVVPIKATSLVEMFLDSE-KWRKLFPtivnKATTTHMLGSE 315 567778888888899**********888866666666666533..344777**************************.***9999999999999999999 PP .......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXX.HH CS START 89 .......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlp.hw 179 + lq++ +l lsplvp R+f++vR++++ ++g w+++dvS + ++ ++ + ++pSg+li+++++ hs+v w+ehv+++ + h 676731158 316 fsiiencNGLQVIWEQLHILSPLVPpREFMIVRCCQKIEEGIWIVADVSHNIVKFDHINPF---CYKRPSGCLIRTLPDAHSEVMWIEHVEVDHKPDtHR 412 *************************************************999999986444...456*************************998768** PP HHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 180 llrslvksglaegaktwvatlqrqcek 206 ++r l+ gak+w l+r ce+ 676731158 413 MYRELLCGNSGYGAKRWIFSLERMCER 439 **********************99996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.7E-18 | 7 | 79 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.78E-16 | 11 | 80 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 14.819 | 21 | 81 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.9E-15 | 23 | 85 | IPR001356 | Homeobox domain |
CDD | cd00086 | 5.80E-16 | 24 | 81 | No hit | No description |
Pfam | PF00046 | 9.8E-16 | 29 | 79 | IPR001356 | Homeobox domain |
PROSITE profile | PS50848 | 33.841 | 207 | 442 | IPR002913 | START domain |
SuperFamily | SSF55961 | 2.06E-22 | 209 | 439 | No hit | No description |
Gene3D | G3DSA:3.30.530.20 | 2.8E-7 | 212 | 407 | IPR023393 | START-like domain |
CDD | cd08875 | 3.83E-83 | 213 | 438 | No hit | No description |
SMART | SM00234 | 4.9E-10 | 216 | 439 | IPR002913 | START domain |
Pfam | PF01852 | 8.0E-24 | 219 | 439 | IPR002913 | START domain |
SuperFamily | SSF55961 | 1.39E-11 | 462 | 664 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 697 aa Download sequence Send to blast |
MDSDDGGSPD NKHYTSINAN IKDKKIGHRH TPQQIQILEA YFKECPHPDE SQKQKLCIDL 60 NLELDQIKFW FQNKRTQSKV QDERNSNILL RRENEKFQCE NNALMETMKN VTCPTCGGPP 120 FGRNERERNL QKLRLENALL KEKRDKIAEH VSENKPQQTM VDSFPSVHGH QTFDSHTSYG 180 IISNNPSEPL ASSASPNFQN IQPQVLSQMD IMQLSETAAS AVEELKRLFF TEEGFWVKSS 240 IDGTYVIDQE SYEKYSHSIT HFKRLGARVE SSKDVTVVPI KATSLVEMFL DSEKWRKLFP 300 TIVNKATTTH MLGSEFSIIE NCNGLQVIWE QLHILSPLVP PREFMIVRCC QKIEEGIWIV 360 ADVSHNIVKF DHINPFCYKR PSGCLIRTLP DAHSEVMWIE HVEVDHKPDT HRMYRELLCG 420 NSGYGAKRWI FSLERMCERM ALSSILTIPA ADWSEVIATV EGRKSVMKLG ERMMKNFNEM 480 LTMSGKIEFP QHSKCGVRIS IRMNMEAGQP SGLVVSAASC ISVPLTPLQV FNCLANKNTR 540 HQWDVLCYGN VVSEIACVST GSSETNYITL LRPTQTTDNG IIMAQDPDKS LVMLQECHMD 600 ALGGMIVYAP LDMATMNIAA SGEVDPSDIP ILPSGFTISS DGRGSMAAED GGTLLTVAFQ 660 ILISGESTET REVSERSVDT VSSLISTTVQ RIKLLLN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676731158 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006408322.1 | 0.0 | homeobox-leucine zipper protein HDG8 | ||||
Swissprot | Q9M9P4 | 0.0 | HDG8_ARATH; Homeobox-leucine zipper protein HDG8 | ||||
TrEMBL | V4LGW8 | 0.0 | V4LGW8_EUTSA; Uncharacterized protein | ||||
STRING | XP_006408322.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12791 | 15 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03260.1 | 0.0 | homeodomain GLABROUS 8 |