PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676731006

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

LBD

Protein Properties

Length: 270aa MW: 28696.7 Da PI: 7.6787

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676731006	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	94.7	1e-29	4	107	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +C++C+vlr++C++dC ++p++ p++q++++ +++k++G++ +++l++a p++ r+ +++sl+ eA+ r+ +P+yG+vg+++++++ql+q+++e++ 676731006 4 SCNGCRVLRKGCSEDCSIRPCLawiksPEAQANATVFLAKFYGRAGLMNLINAGPDHLRPGIFRSLLHEACGRIVNPIYGSVGLLWSGNWQLCQAAVEAV 103 6************************************************************************************************998 PP DUF260 96 llke 99 + +e 676731006 104 MKGE 107 8776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PIRSF	PIRSF038155	2.7E-103	1	270	IPR017414	LOB domain-containing protein 10/36/41
PROSITE profile	PS50891	16.369	3	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	7.1E-24	4	104	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 270 aa Download sequence Send to blast
MRMSCNGCRV LRKGCSEDCS IRPCLAWIKS PEAQANATVF LAKFYGRAGL MNLINAGPDH 60 LRPGIFRSLL HEACGRIVNP IYGSVGLLWS GNWQLCQAAV EAVMKGEPIT EIATDAATNG 120 QGPPLKMYDI RHNSKDETSA AAAAPAATGS TDPKRAKTRR AKRVTVVAEP AESEGKSAGG 180 EAASHESSLS HQSDIVAAHE GESKESESNI SEVMALSPPA VQGSGEIKLD LTLGLEPVSR 240 ACHVIPVKKR KIGVFATCQE ESTCKTELML

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676731006

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006408407.1	1e-176	LOB domain-containing protein 41
Swissprot	Q9M886	1e-170	LBD41_ARATH; LOB domain-containing protein 41
TrEMBL	V4LH47	1e-175	V4LH47_EUTSA; Uncharacterized protein
STRING	XP_006408407.1	1e-175	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7721	27	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02550.1	1e-149	LOB domain-containing protein 41