PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676730938
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family TCP
Protein Properties Length: 339aa    MW: 37392.1 Da    PI: 7.0038
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676730938genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP103.53.6e-32731922103
        TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasnsssg........... 88 
                 g+kdrhsk++T +g+RdRRvRls+++a++++dLq++LG+d++sk+++WLl +ak++i+el+ ++ s++++   ++++s  + +  + +           
  676730938  73 FGGKDRHSKVCTLRGLRDRRVRLSVPTAIQLYDLQERLGVDQPSKAVDWLLDAAKEEIDELPPLPVSPETFGlfNHHQSFLNLGPRTGQdptqlgfking 172
                689*************************************************************777774445544444444442222234444455555 PP

        TCP  89 ....kaaksaa.kskksqks 103
                    +a+++++  +++++++
  676730938 173 cveeSASTTTTsREENNNER 192
                55432222222122222222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136931.31475133IPR017887Transcription factor TCP subgroup
PfamPF036341.1E-2875151IPR005333Transcription factor, TCP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0031347Biological Processregulation of defense response
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:0009507Cellular Componentchloroplast
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MSTVPWKDTN DDVSGGTKTR REGEAEEDAE EAVAVSTSGK TVITKPPTSI SSSSSSSWMK  60
SKDPRIVRVS RAFGGKDRHS KVCTLRGLRD RRVRLSVPTA IQLYDLQERL GVDQPSKAVD  120
WLLDAAKEEI DELPPLPVSP ETFGLFNHHQ SFLNLGPRTG QDPTQLGFKI NGCVEESAST  180
TTTSREENNN ERGEKDVAFA NNHHIGSYGI YHNMEHHYHQ QHSSFQADYH HHQHQLHSLV  240
PFPSQFLVYP MTASSTTTTI QSLFPSSSSA GSGNMGTTDP RQMVGHFQMP LMGSSSSSAS  300
QNISNLYSLL HGSSSNNDSS NRMSSVQFNR TSRGRDNPM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A3e-1980134155Putative transcription factor PCF6
5zkt_B3e-1980134155Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Binds to the 3'-ACC-5' repeats in the light-responsive promoter (LRP) of psbD, and activates its transcription. Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:11161017, ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00326DAPTransfer from AT3G02150Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676730938
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009134647.11e-176PREDICTED: transcription factor TCP13-like isoform X1
RefseqXP_009134648.11e-176PREDICTED: transcription factor TCP13-like isoform X1
RefseqXP_009134649.11e-176PREDICTED: transcription factor TCP13-like isoform X1
RefseqXP_018513324.11e-176PREDICTED: transcription factor TCP13-like isoform X1
SwissprotQ9S7W51e-175TCP13_ARATH; Transcription factor TCP13
TrEMBLA0A178VKM01e-174A0A178VKM0_ARATH; TFPD
TrEMBLA0A398A2Q51e-174A0A398A2Q5_BRACM; Uncharacterized protein
STRINGAT3G02150.21e-174(Arabidopsis thaliana)
STRINGBo3g055460.11e-174(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM91342637
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02150.21e-137plastid transcription factor 1
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Yamburenko MV,Zubo YO,Börner T
    Abscisic acid affects transcription of chloroplast genes via protein phosphatase 2C-dependent activation of nuclear genes: repression by guanosine-3'-5'-bisdiphosphate and activation by sigma factor 5.
    Plant J., 2015. 82(6): p. 1030-41
    [PMID:25976841]
  3. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]