PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676730684
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family HD-ZIP
Protein Properties Length: 226aa    MW: 26182.2 Da    PI: 4.9742
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676730684genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox54.61.8e-1768121356
                --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                k++++t+ ql+ Lee Fe+++ +  e++  LA+klgL+ +qV+vWFqNrRa+ k
  676730684  68 KKRKLTPIQLRLLEESFEEEKRLEPERKLWLAEKLGLQPSQVSVWFQNRRARFK 121
                56699***********************************************98 PP
2HD-ZIP_I/II113.41.4e-3668158292
  HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                  kkr+l+  q++lLEesFeee++LeperK  la++Lglqp qv vWFqnrRAR+ktkqlE+d+++Lk++y +lk++++ L  ++e+L+++++
    676730684  68 KKRKLTPIQLRLLEESFEEEKRLEPERKLWLAEKLGLQPSQVSVWFQNRRARFKTKQLEHDCDSLKASYAKLKTDRDILFLQNEALKNKVA 158
                  9**************************************************************************************9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.99E-1854125IPR009057Homeodomain-like
PROSITE profilePS5007116.40663123IPR001356Homeobox domain
SMARTSM003898.3E-1766127IPR001356Homeobox domain
PfamPF000466.2E-1568121IPR001356Homeobox domain
CDDcd000862.45E-1568124No hitNo description
Gene3DG3DSA:1.10.10.601.2E-1870129IPR009057Homeodomain-like
PRINTSPR000315.2E-594103IPR000047Helix-turn-helix motif
PROSITE patternPS00027098121IPR017970Homeobox, conserved site
PRINTSPR000315.2E-5103119IPR000047Helix-turn-helix motif
PfamPF021838.4E-13123164IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MENSNTDPEV FSWFQNQNQS HCHKFPSSCF PPTSHSAFYG SSSMSNTETN IVDEDDVCES  60
YKIREITKKR KLTPIQLRLL EESFEEEKRL EPERKLWLAE KLGLQPSQVS VWFQNRRARF  120
KTKQLEHDCD SLKASYAKLK TDRDILFLQN EALKNKVALL KEELKMQEKL ETQSMEADVE  180
KLGEEGSSVK SDNTQYSEEE GLGSNQYSFP ELAALGFYYN ASNPRL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1115123RRARFKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676730684
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009115435.11e-137PREDICTED: homeobox-leucine zipper protein ATHB-54
SwissprotP0CJ651e-135ATB54_ARATH; Homeobox-leucine zipper protein ATHB-54
TrEMBLA0A397XYR61e-136A0A397XYR6_BRACM; Uncharacterized protein
STRINGAT1G27045.11e-133(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM159081314
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27045.11e-108HD-ZIP family protein