PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676729986
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family HSF
Protein Properties Length: 313aa    MW: 33516.8 Da    PI: 4.3635
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676729986genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind100.21.9e-3159138290
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgk 90 
                   Fl+k+y++++d+ +++lisw+++g++f+v+ + efa+++LpkyFkh+nf+SFvRQLn+YgF+kv  ++         weF+++ F++  
     676729986  59 FLTKTYQLVDDPVYDDLISWNDDGSTFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFSNDCFRRAA 138
                   9****************************************************************999.........********9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.2E-3551137IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.8E-4555141IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467853.9E-3156137IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000563.1E-205982IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004474.9E-2859138IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.1E-2097109IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434098122IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.1E-20110122IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.20.5.1703.3E-4160188No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MPGEQTGETP TVAGVGGGGG GCSAGNSGGS SGCGAGGGGG AGGGGGGGGD SQRSIPTPFL  60
TKTYQLVDDP VYDDLISWND DGSTFIVWRP AEFARDLLPK YFKHNNFSSF VRQLNTYGFR  120
KVVPDRWEFS NDCFRRAAAS GGGPGGVVLQ RTTSCTTAPE LIEENDRLRK ENVQLSQELA  180
KLKGLYSNIY TLMSNFTSGQ AECANLLPDG KPLDLLSERQ RASEDIAMAT GIETGIGLKL  240
DEDLTPRLFG VSIGMKRARR DEELGAAEEE DDERREERRE ASNREGEGSD VKSEPMEENN  300
SDNDNGPWLE LGK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-23341361117Heat shock factor protein 1
5d5v_B3e-23341361117Heat shock factor protein 1
5d5v_D3e-23341361117Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMap676729986
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0932061e-125AY093206.1 Arabidopsis thaliana heat shock transcription factor-like protein (At4g11660) mRNA, complete cds.
GenBankBT0084711e-125BT008471.1 Arabidopsis thaliana At4g11660 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010540690.11e-125PREDICTED: heat stress transcription factor B-2b
SwissprotQ9T0D32e-68HFB2B_ARATH; Heat stress transcription factor B-2b
TrEMBLA0A078JFA61e-123A0A078JFA6_BRANA; BnaC03g73070D protein
STRINGXP_010540690.11e-125(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96528111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11660.16e-61HSF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]