PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676729964
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family NAC
Protein Properties Length: 335aa    MW: 37782.1 Da    PI: 9.1414
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676729964genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM167.64.1e-52161422128
        NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelv 100
                 pGfrFhPtdeelv++yLk+kv +k+l++ e ik+vdiyk++PwdLpk ++ +ekewyf+++rd+ky++++r+nr+t  g+Wkatg+d++++s  +++ +
  676729964  16 LPGFRFHPTDEELVSFYLKRKVLHKSLPF-ELIKKVDIYKHDPWDLPKLAAMGEKEWYFYCPRDRKYRNSTRPNRVTGGGFWKATGTDRPIYSLdSTRCI 114
                69**************************9.89***************8778899**************************************9856677* PP

        NAM 101 glkktLvfykgrapkgektdWvmheyrl 128
                glkk+Lvfy+gra kg+ktdW+mhe+rl
  676729964 115 GLKKSLVFYRGRAAKGVKTDWMMHEFRL 142
                **************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.48E-5814185IPR003441NAC domain
PROSITE profilePS5100555.8415185IPR003441NAC domain
PfamPF023651.6E-2517142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MDNESNNVEI FDDVVLPGFR FHPTDEELVS FYLKRKVLHK SLPFELIKKV DIYKHDPWDL  60
PKLAAMGEKE WYFYCPRDRK YRNSTRPNRV TGGGFWKATG TDRPIYSLDS TRCIGLKKSL  120
VFYRGRAAKG VKTDWMMHEF RLPSLSDSHH SSSYPTNNNK KQHHNSNNKE IPSSDAWAIC  180
RIFKKTNSVS SQRSIPQSWL YPATPEANQY NSQSQTATLF ASTDVFSHIA TRQNLISSPV  240
DESASFTESA AAYFASQMLG VPYNTARNSG TGDALFLRNS GTGDALFLRN NENNYFNNLA  300
GALTHELPNV RSMVESGFGT TTGSEMSATS YSTNN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-521718817171Stress-induced transcription factor NAC1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00537DAPTransfer from AT5G39820Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676729964
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0168761e-122AB016876.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MKM21.
GenBankCP0026881e-122CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
GenBankHG9686031e-122HG968603.1 Arabidopsis thaliana T-DNA flanking sequence, clone GK-027D08-028756.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018444956.10.0PREDICTED: putative NAC domain-containing protein 94
SwissprotQ9FIW50.0NAC94_ARATH; Putative NAC domain-containing protein 94
TrEMBLA0A078FF980.0A0A078FF98_BRANA; BnaC06g12700D protein
TrEMBLA0A0D3CT030.0A0A0D3CT03_BRAOL; Uncharacterized protein
TrEMBLA0A3P6FTM90.0A0A3P6FTM9_BRAOL; Uncharacterized protein
STRINGBo6g064260.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30628200
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39820.10.0NAC domain containing protein 94