PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676729962 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | MYB | ||||||||
Protein Properties | Length: 113aa MW: 13048.2 Da PI: 9.8816 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 42.4 | 1.6e-13 | 10 | 50 | 4 | 45 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 W Ede+l+ av ++G+++W++I++ + ++++kqck rw 676729962 10 WRNTEDEILKAAVMKYGKNQWARISALLV-RKSAKQCKARWD 50 9999*************************.***********5 PP | |||||||
2 | Myb_DNA-binding | 23.4 | 1.3e-07 | 61 | 103 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 + WT e+ e+l+++ k+l+ W+tIa +g Rt+ +c + + k 676729962 61 KSEWTGEDTEKLLHLAKLLPAQ-WRTIAPIVG--RTPSECLEMYEK 103 578*****************99.********8..******776665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.757 | 1 | 59 | IPR017930 | Myb domain |
SMART | SM00717 | 3.0E-9 | 6 | 57 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-15 | 6 | 58 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.4E-11 | 10 | 51 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.2E-13 | 10 | 86 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.63E-10 | 10 | 49 | No hit | No description |
CDD | cd11659 | 2.94E-25 | 57 | 108 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 9.9E-11 | 59 | 106 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.3E-8 | 60 | 107 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 8.971 | 60 | 109 | IPR017930 | Myb domain |
Pfam | PF00249 | 1.1E-5 | 61 | 104 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 113 aa Download sequence Send to blast |
MRIMTKGAVW RNTEDEILKA AVMKYGKNQW ARISALLVRK SAKQCKARWD DHEWLDPSIK 60 KSEWTGEDTE KLLHLAKLLP AQWRTIAPIV GRTPSECLEM YEKLLNAAAC TKH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5mqf_L | 1e-52 | 2 | 109 | 3 | 108 | Cell division cycle 5-like protein |
5xjc_L | 1e-52 | 2 | 109 | 3 | 108 | Cell division cycle 5-like protein |
5yzg_L | 1e-52 | 2 | 109 | 3 | 108 | Cell division cycle 5-like protein |
5z56_L | 1e-52 | 2 | 109 | 3 | 108 | Cell division cycle 5-like protein |
5z57_L | 1e-52 | 2 | 109 | 3 | 108 | Cell division cycle 5-like protein |
5z58_L | 1e-52 | 2 | 109 | 3 | 108 | Cell division cycle 5-like protein |
6ff4_L | 1e-52 | 2 | 109 | 3 | 108 | Cell division cycle 5-like protein |
6ff7_L | 1e-52 | 2 | 109 | 3 | 108 | Cell division cycle 5-like protein |
6icz_L | 1e-52 | 2 | 109 | 3 | 108 | Cell division cycle 5-like protein |
6id0_L | 1e-52 | 2 | 109 | 3 | 108 | Cell division cycle 5-like protein |
6id1_L | 1e-52 | 2 | 109 | 3 | 108 | Cell division cycle 5-like protein |
6qdv_O | 1e-52 | 2 | 109 | 3 | 108 | Cell division cycle 5-like protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence 'CTCAGCG' binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage. {ECO:0000250|UniProtKB:Q99459, ECO:0000269|PubMed:17298883, ECO:0000269|PubMed:17575050, ECO:0000269|PubMed:8917598}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676729962 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006398166.1 | 8e-60 | cell division cycle 5-like protein | ||||
Refseq | XP_016516169.1 | 6e-61 | PREDICTED: cell division cycle 5-like protein, partial | ||||
Refseq | XP_019232628.1 | 7e-60 | PREDICTED: cell division cycle 5-like protein | ||||
Swissprot | P92948 | 1e-59 | CDC5L_ARATH; Cell division cycle 5-like protein | ||||
TrEMBL | A0A1D6N2M2 | 1e-58 | A0A1D6N2M2_MAIZE; CDC5 protein | ||||
TrEMBL | A0A1S4DSP6 | 1e-59 | A0A1S4DSP6_TOBAC; cell division cycle 5-like protein | ||||
STRING | Lus10043451 | 3e-60 | (Linum usitatissimum) | ||||
STRING | XP_006398166.1 | 3e-59 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16532 | 9 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09770.1 | 5e-62 | cell division cycle 5 |
Publications ? help Back to Top | |||
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