PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 676729938 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
|
||||||||
Family | HSF | ||||||||
Protein Properties | Length: 138aa MW: 15833.3 Da PI: 10.3786 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 45.4 | 2.2e-14 | 8 | 93 | 2 | 91 |
HHHHHHHHHCTGGGTTTSEES..SSSSEEEES-HHHHHHHTHHH.HSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS HSF_DNA-bind 2 Flkklyeiledeelkelisws..engnsfvvldeeefakkvLpk.yFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 F kly+i++d++ + ++sw+ +n++sf+++d ++f++++L+k ++++ F+ Q gFk + + ++ eF+h+ F kg 676729938 8 FYIKLYQIVDDPSSDAIVSWNksNNQSSFILWDLKRFQREILSKsSVMGRSIKEFMSQFRSRGFKVIAKGPGE-------LEFSHDDFAKGLL 93 999******************6445599**************773678899******************9999.......********99854 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 1.1E-15 | 3 | 91 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 7.0E-8 | 4 | 99 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 2.31E-12 | 5 | 91 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 5.7E-11 | 8 | 92 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.1E-5 | 8 | 31 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.1E-5 | 62 | 74 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 138 aa Download sequence Send to blast |
MESSSSSFYI KLYQIVDDPS SDAIVSWNKS NNQSSFILWD LKRFQREILS KSSVMGRSIK 60 EFMSQFRSRG FKVIAKGPGE LEFSHDDFAK GLLNKTMVKD LSQRIQKLDD EVKAIKCRIK 120 AKKAAVKVDS LFQNLRIC |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | 676729938 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013745665.1 | 2e-57 | heat shock factor protein HSF8-like | ||||
TrEMBL | M4EA01 | 1e-55 | M4EA01_BRARP; Uncharacterized protein | ||||
STRING | Bra025608.1-P | 2e-56 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3839 | 14 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G77570.1 | 4e-25 | Winged helix-turn-helix transcription repressor DNA-binding |