PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676729922 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | HSF | ||||||||
Protein Properties | Length: 144aa MW: 16518.3 Da PI: 10.5163 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 48.7 | 2e-15 | 14 | 102 | 2 | 94 |
HHHHHHHHHCTGGGTTTSEES..SSSSEEEES-HHHHHHHTHHH.HSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS HSF_DNA-bind 2 Flkklyeiledeelkelisws..engnsfvvldeeefakkvLpk.yFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 F +kly++++d++ + ++sw+ +n++sfvv+d ++f++++L+k ++++ F+ QL gFk + + ++ eF+h+ F kg +++ 676729922 14 FYMKLYQVVDDPSSDAIVSWNksNNQSSFVVWDLKRFEREILSKsSLMGRSLKEFMSQLRCRGFKVIAKGPGE-------LEFSHDDFAKGLVNKI 102 999******************6445599**************764788999******************9999.......*********9966543 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 9.0E-18 | 6 | 98 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 4.1E-10 | 10 | 105 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 4.08E-13 | 11 | 97 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 2.9E-12 | 14 | 99 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.1E-5 | 14 | 37 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.1E-5 | 68 | 80 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 144 aa Download sequence Send to blast |
MTKKLSMESS SSSFYMKLYQ VVDDPSSDAI VSWNKSNNQS SFVVWDLKRF EREILSKSSL 60 MGRSLKEFMS QLRCRGFKVI AKGPGELEFS HDDFAKGLVN KIMVKELSQR IQKLDDQVKA 120 IKCRIKAKKA VVKVDSLFQN LRIS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676729922 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013745665.1 | 2e-58 | heat shock factor protein HSF8-like | ||||
TrEMBL | A0A078HHE2 | 5e-56 | A0A078HHE2_BRANA; BnaC04g32170D protein | ||||
TrEMBL | A0A0D3C016 | 5e-56 | A0A0D3C016_BRAOL; Uncharacterized protein | ||||
STRING | Bo4g139630.1 | 9e-57 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3839 | 14 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G77570.1 | 9e-26 | Winged helix-turn-helix transcription repressor DNA-binding |