PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676729892
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family bHLH
Protein Properties Length: 92aa    MW: 10543.9 Da    PI: 8.5137
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676729892genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH21.73.6e-0724592054
               HHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
        HLH 20 feeLrellPk.askapskKlsKaeiLekAveYIksL 54
                 +Lr++lP+   + +s K+s + +L+++++YI++L
  676729892 24 VTKLRQILPEiGQRRRSDKVSASKVLQETCNYIRNL 59
               579*******999*********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.953459IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.1E-71975IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-72279IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-42359IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 92 aa     Download sequence    Send to blast
MSNRRSRQSS SAPRISDDQM IDLVTKLRQI LPEIGQRRRS DKVSASKVLQ ETCNYIRNLN  60
REVDNLSDRL SQLLESVDED SPEAAVIRSL LM
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269|PubMed:16527868}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676729892
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002870750.11e-57transcription factor PRE1
RefseqXP_006405588.11e-57transcription factor PRE1
SwissprotQ9LJX12e-52PRE5_ARATH; Transcription factor PRE5
TrEMBLD7MJG83e-56D7MJG8_ARALL; Uncharacterized protein
TrEMBLV4NKZ43e-56V4NKZ4_EUTSA; Uncharacterized protein
STRINGscaffold_704049.14e-57(Arabidopsis lyrata)
STRINGXP_006405588.14e-57(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25928225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28857.11e-54bHLH family protein