PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676729886
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family ZF-HD
Protein Properties Length: 332aa    MW: 36235.8 Da    PI: 8.0147
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676729886genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer1085.5e-3453109459
  ZF-HD_dimer   4 vrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 
                  ++YkeClkNhAa+lGgha+DGCgEfmps+++  +++++lkCaACgCHRnFHRre+++
    676729886  53 FTYKECLKNHAAALGGHALDGCGEFMPSPSSVsTDPTSLKCAACGCHRNFHRREPDN 109
                  68**************************9998899*******************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047702.4E-2854107IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015668.1E-3254106IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257749.0E-1255110IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.71755106IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.605.2E-29188262IPR009057Homeodomain-like
SuperFamilySSF466891.13E-18188262IPR009057Homeodomain-like
TIGRFAMsTIGR015657.2E-26201258IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0042803Molecular Functionprotein homodimerization activity
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MDMTTTHTTI TPTPKSPEPE PETPTRIQPA KPISFSNGII KRHHHHYSPP LLFTYKECLK  60
NHAAALGGHA LDGCGEFMPS PSSVSTDPTS LKCAACGCHR NFHRREPDND SSSIPPPSSV  120
AAAIEYQPHH RHHPPPPPQQ PQPQAAPRSP NSSSPPPISS SYMLLSLSGT NNNNVAFSDL  180
NFSGNNNHHH HHNHHNQAGS RKRFRTKFTQ FQKEKMQEFA ERVGWKMQKR DEDDVRDFCH  240
EVGVDKSVLK VWMHNNKNTF SRRDIIPFSV AGATEVQKID NGGTVLAGEA NSHNNNNELH  300
HSVSSGGGGF DSDSGVGGGR ADGGNVNGSS SS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A1e-202002591675ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00536DAPTransfer from AT5G39760Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676729886
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006405598.11e-117zinc-finger homeodomain protein 10
SwissprotQ9LHF01e-102ZHD9_ARATH; Zinc-finger homeodomain protein 9
TrEMBLA0A1J3DQ891e-122A0A1J3DQ89_NOCCA; Zinc-finger homeodomain protein 10
STRINGXP_006405598.11e-117(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22202575
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39760.14e-76homeobox protein 23
Publications ? help Back to Top
  1. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]