PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676729696

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

NAC

Protein Properties

Length: 337aa MW: 38222.2 Da PI: 8.1955

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676729696	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	183.3	6e-57	16	142	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelv 100 lppGfrFhPtdeel+++yL+kkv ++++++ ++i evd++k+ePw+Lp ++k +ekewyfF+ rd+ky+tg r+nrat++gyWkatgkdke+++ +++lv 676729696 16 LPPGFRFHPTDEELISHYLHKKVLDTSFSA-KAIGEVDLNKSEPWELPWMAKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIYR-GKSLV 113 79*************************9.89***********8888899***********************************.999 PP NAM 101 glkktLvfykgrapkgektdWvmheyrle 129 g+kktLvfy+grapkg+kt+Wvmheyrle 676729696 114 GMKKTLVFYRGRAPKGQKTNWVMHEYRLE 142 ***************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.93E-65	12	166	IPR003441	NAC domain
PROSITE profile	PS51005	60.341	16	166	IPR003441	NAC domain
Pfam	PF02365	8.3E-30	17	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 337 aa Download sequence Send to blast
METFCGFQKE EEQMDLPPGF RFHPTDEELI SHYLHKKVLD TSFSAKAIGE VDLNKSEPWE 60 LPWMAKMGEK EWYFFCVRDR KYPTGLRTNR ATEAGYWKAT GKDKEIYRGK SLVGMKKTLV 120 FYRGRAPKGQ KTNWVMHEYR LEGKLSAHNL PKTAKNEWVI CRVFQKSAGG KKIPISSLIR 180 IGSLGTDFSS PSLLPSLTDA SPFNDKTKTE PVYVPCFSNQ TDQAQGNTLS CFNTPVLSSI 240 QADIFHRIPL YQTQSLQVSG NLQSPTLAQE HSVLQAMIDN NRRQSLKAMS VSQETAVSAD 300 MNTDISSDFE YGKRRFDAQE EPSSSAGPVD LEPFWNY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	5e-55	13	172	17	174	NAC domain-containing protein 19
3swm_B	5e-55	13	172	17	174	NAC domain-containing protein 19
3swm_C	5e-55	13	172	17	174	NAC domain-containing protein 19
3swm_D	5e-55	13	172	17	174	NAC domain-containing protein 19
3swp_A	5e-55	13	172	17	174	NAC domain-containing protein 19
3swp_B	5e-55	13	172	17	174	NAC domain-containing protein 19
3swp_C	5e-55	13	172	17	174	NAC domain-containing protein 19
3swp_D	5e-55	13	172	17	174	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676729696

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY054644	0.0	AY054644.1 Arabidopsis thaliana NAM (no apical meristem)-like protein (MFB13.22) mRNA, complete cds.
GenBank	AY081496	0.0	AY081496.1 Arabidopsis thaliana NAM (no apical meristem)-like protein (MFB13.22) mRNA, complete cds.
GenBank	AY085102	0.0	AY085102.1 Arabidopsis thaliana clone 12970 mRNA, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_200951.1	0.0	NAC domain containing protein 100
Refseq	XP_020871917.1	0.0	NAC domain-containing protein 100
Swissprot	Q9FLJ2	0.0	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A1J3H292	0.0	A0A1J3H292_NOCCA; Uncharacterized protein
STRING	AT5G61430.1	0.0	(Arabidopsis thaliana)
STRING	fgenesh2_kg.8__2118__AT5G61430.1	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM400	28	174

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	0.0	NAC domain containing protein 100

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]