PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676729688
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family MIKC_MADS
Protein Properties Length: 220aa    MW: 25437.4 Da    PI: 7.7886
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676729688genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.66.7e-28959151
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
               kri+n + r+vtfskRr+g+lKKA+ELSvLCda+va i+fs++gkly+++s
  676729688  9 KRIDNLTSRHVTFSKRRKGLLKKAHELSVLCDAQVAAIVFSQKGKLYDFAS 59
               79***********************************************86 PP
2K-box501.3e-17831779100
      K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkk...ekelqeenkaLrkklee 100
                ++e++ + l++e++ + + ie Lq   R+l+G+dL+s+s++eL+++  q+eksl+ +Rs+K ++  +++ +l+     ++el +e ++L++++ee
  676729688  83 QKEQDVQDLKNEITVMLSSIELLQLHCRKLMGQDLDSCSVEELKEITIQIEKSLTIVRSRKAKVNDDEVGKLKTEiagKRELLNERTRLHEMFEE 177
                78999*******************999*******************************************9998633367788888888887765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006630.656161IPR002100Transcription factor, MADS-box
SMARTSM004328.7E-40160IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-28323IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.5E-30374IPR002100Transcription factor, MADS-box
CDDcd002655.99E-38368No hitNo description
PfamPF003195.5E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-283859IPR002100Transcription factor, MADS-box
PfamPF014868.9E-1884175IPR002487Transcription factor, K-box
PROSITE profilePS5129711.23988181IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MVRGKIEIKR IDNLTSRHVT FSKRRKGLLK KAHELSVLCD AQVAAIVFSQ KGKLYDFASS  60
DMKKMIERCE IHRREHFNAE RLQKEQDVQD LKNEITVMLS SIELLQLHCR KLMGQDLDSC  120
SVEELKEITI QIEKSLTIVR SRKAKVNDDE VGKLKTEIAG KRELLNERTR LHEMFEEKPL  180
WMQSTSRLES EKSAASCACE NMDISDVETD LFIGLPKCQE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A3e-17176176MEF2C
5f28_B3e-17176176MEF2C
5f28_C3e-17176176MEF2C
5f28_D3e-17176176MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMADS-box transcription factor that acts with AGL42 and AGL71 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1. {ECO:0000269|PubMed:21609362}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676729688
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2325422e-65AC232542.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH005L20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009130170.11e-132PREDICTED: MADS-box protein AGL71-like
RefseqXP_013675386.11e-132MADS-box protein AGL71
SwissprotQ9FLH52e-72AGL72_ARATH; MADS-box protein AGL72
TrEMBLA0A078HZW31e-131A0A078HZW3_BRANA; BnaAnng06990D protein
TrEMBLA0A398AGB51e-131A0A398AGB5_BRACM; Uncharacterized protein
TrEMBLA0A3P6B9711e-131A0A3P6B971_BRACM; Uncharacterized protein
STRINGBo2g161560.11e-125(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM88051235
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51860.27e-78MIKC_MADS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]