PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676729624 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | ARF | ||||||||
Protein Properties | Length: 858aa MW: 95759.9 Da PI: 6.7746 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 71.5 | 1.1e-22 | 165 | 266 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 f+k+lt sd++++g +++ +++a+e+ + + + +++l+ +d++ ++W++++i+r++++r++l++GW+ Fv++++L +gD ++F + +++el+v 676729624 165 FCKTLTASDTSTHGGFSVLRRHADEClppldmSRQ-PPTQELVAKDLHANEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFL--RGENGELRV 261 99*****************************7333.34459************************************************..449999*** PP EEE-S CS B3 95 kvfrk 99 +v+r+ 676729624 262 GVRRA 266 **996 PP | |||||||
2 | Auxin_resp | 120.8 | 1e-39 | 291 | 373 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha+st+++F+v+Y+Pr+s+seF+v+++++++++k+++s+GmRfkm+fe+e+++e+r++Gt+vg++d+dp+rW +SkWrsLk 676729624 291 AWHAISTGTMFTVYYKPRTSPSEFIVPFDQYMESVKNNYSIGMRFKMRFEGEEAPEQRFTGTIVGIEDSDPTRWAKSKWRSLK 373 89*******************************************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.2E-40 | 161 | 280 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.14E-40 | 162 | 294 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.46E-20 | 163 | 265 | No hit | No description |
SMART | SM01019 | 4.1E-22 | 165 | 267 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.42 | 165 | 267 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.5E-20 | 165 | 266 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 7.8E-37 | 291 | 373 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 5.6E-10 | 720 | 817 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 8.34E-12 | 729 | 809 | No hit | No description |
PROSITE profile | PS51745 | 25.274 | 732 | 830 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008285 | Biological Process | negative regulation of cell proliferation | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009911 | Biological Process | positive regulation of flower development | ||||
GO:0010047 | Biological Process | fruit dehiscence | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0010227 | Biological Process | floral organ abscission | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 858 aa Download sequence Send to blast |
MASSEVSTKG NRGGDNFSSS SAVAYSTDPT ETRNVSDALK THSNRSVAGE RVVDPEAALY 60 RELWHACAGP LVTVPRQDDR VFYFPQGHIE QVEASTNQAA EQQMPLYDLP SKLLCRVINV 120 DLKAEADTDE VYAQITLLPE PNQDENAIEK EAPPPPPPRF QVHSFCKTLT ASDTSTHGGF 180 SVLRRHADEC LPPLDMSRQP PTQELVAKDL HANEWRFRHI FRGQPRRHLL QSGWSVFVSS 240 KRLVAGDAFI FLRGENGELR VGVRRAMRQQ GNVPSSVISS HSMHLGVLAT AWHAISTGTM 300 FTVYYKPRTS PSEFIVPFDQ YMESVKNNYS IGMRFKMRFE GEEAPEQRFT GTIVGIEDSD 360 PTRWAKSKWR SLKVRWDETT SIPRPDRVSP WKIEPALAPP ALTPIPMPRP KRPRSNVAPS 420 SPDSSMLIRE GSSKANMDPL PASGLSRVLQ GQEYPTLRTK HTENVECDAP ENSVVWQSSA 480 DDDKVDVVSA SRRYENWMSS GRHEPTYTDL LSGFGANIEP PHGHQIPFYD HSSSPSVAAK 540 KILTDQDGKF DYLANQWQMM HSGLSLKLHE SPKVPAASDT SFQGRGNGKY GEYPVLHART 600 TENAGGNWPI RPRALNYFEE AVHAQALAQA REHVSKRPAV VQEEAAKSRD GNCRLFGIPL 660 VNNVNGTDAN MSQRNNLNDT TVPTQIASPK VQDLSDQSKG SKSTNDHREQ GRQFQTNNPH 720 PKDVHSKTNS SRSCTKVHKQ GIALGRSVDL SKFQNYEELI AELDRLFEFN GELMAPKKDW 780 LIVYTDDEND MMLVGDDPWQ EFCCMVRKIF IYTKEEVRKM NPGTLSCRNE EEAVVGEGSD 840 AKDAKSASNP SFSTAGNS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-180 | 58 | 395 | 18 | 354 | Auxin response factor 1 |
4ldw_A | 1e-180 | 58 | 395 | 18 | 354 | Auxin response factor 1 |
4ldw_B | 1e-180 | 58 | 395 | 18 | 354 | Auxin response factor 1 |
4ldx_A | 1e-180 | 58 | 395 | 18 | 354 | Auxin response factor 1 |
4ldx_B | 1e-180 | 58 | 395 | 18 | 354 | Auxin response factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Promotes flowering, stamen development, floral organ abscission and fruit dehiscence. Functions independently of ethylene and cytokinin response pathways. May act as a repressor of cell division and organ growth. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:15960614, ECO:0000269|PubMed:16176952, ECO:0000269|PubMed:16339187}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00574 | DAP | Transfer from AT5G62000 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676729624 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JN979460 | 0.0 | JN979460.1 Brassica rapa subsp. pekinensis auxin response factor 2-2 (ARF2-2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001330603.1 | 0.0 | auxin response factor 2 | ||||
Refseq | NP_201006.2 | 0.0 | auxin response factor 2 | ||||
Refseq | NP_851244.1 | 0.0 | auxin response factor 2 | ||||
Refseq | NP_974980.1 | 0.0 | auxin response factor 2 | ||||
Swissprot | Q94JM3 | 0.0 | ARFB_ARATH; Auxin response factor 2 | ||||
TrEMBL | A0A178UUC3 | 0.0 | A0A178UUC3_ARATH; Auxin response factor | ||||
STRING | AT5G62000.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5348 | 26 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62000.3 | 0.0 | auxin response factor 2 |