PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676729578
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family MYB
Protein Properties Length: 318aa    MW: 35476.9 Da    PI: 8.4489
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676729578genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.51.5e-081154344
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                     +W+ ++d  + +a + +  +   +W++Ia  ++ g+tl q+k+++
        676729578 11 SWSRDDDIAFERALAIYTDEtenRWEKIAGVIP-GKTLQQIKEHY 54
                     6*****************99*************.**********9 PP
2Myb_DNA-binding45.71.5e-14112156347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT +E+ +++++ +++G+g+W++I+r +  +Rt+ q+ s+ qky
        676729578 112 AWTSDEHSRFLRGLEKYGKGDWRSISRNFVVTRTPTQVASHAQKY 156
                      6*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512948.692462IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.1E-5659IPR009057Homeodomain-like
SMARTSM007172.1E-8860IPR001005SANT/Myb domain
PfamPF002492.2E-61154IPR001005SANT/Myb domain
CDDcd001679.25E-91158No hitNo description
SuperFamilySSF466898.61E-111166IPR009057Homeodomain-like
PROSITE profilePS5129418.006105161IPR017930Myb domain
SuperFamilySSF466894.45E-16106161IPR009057Homeodomain-like
SMARTSM007172.9E-10109159IPR001005SANT/Myb domain
TIGRFAMsTIGR015573.2E-17109159IPR006447Myb domain, plants
PfamPF002498.5E-12112156IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.1E-11112156IPR009057Homeodomain-like
CDDcd001671.22E-9112157No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MILGEKISGC SWSRDDDIAF ERALAIYTDE TENRWEKIAG VIPGKTLQQI KEHYEILLQD  60
VMMIESGCVR LPDYEETYDT ERSLSERGIN LKCECKHEGK SKLKHKRRKG IAWTSDEHSR  120
FLRGLEKYGK GDWRSISRNF VVTRTPTQVA SHAQKYFARL NSKNKYTRRA SIHDVDVGES  180
SNSSRMQRPI TSPSAQATQA TSQPSQDHHP TYGAPTTLNT QATSQPSLDG LVYGTPTLWN  240
TQAALQPSVN IPIYGTPTMG HPVVGPVVLP FGSDMNRLVP PHMAYGIQYH SVPYSSVPSA  300
PLDTGPVPCN MTDTPTSR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-16892791RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676729578
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013647161.11e-142transcription factor SRM1
SwissprotQ9FNN62e-89SRM1_ARATH; Transcription factor SRM1
TrEMBLA0A3P5YW241e-141A0A3P5YW24_BRACM; Uncharacterized protein
STRINGBra009699.1-P1e-141(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM133911628
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23650.11e-120Homeodomain-like transcriptional regulator
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]