PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676729508

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

TCP

Protein Properties

Length: 264aa MW: 28407.6 Da PI: 10.15

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676729508	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	122.6	4.3e-38	41	227	3	120
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg.............. 88 +kk + +++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as+++a+ s +s+ +s+ 676729508 41 VKKPPAKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSTASVSIRGHSTTNSTstnctlsssldhkp 140 79*************************************************************9999977733333222222222245566777778888 PP TCP 89 .......................................................kaaksaakskksqksaasalnlakesrakara 120 ++ + ++++++q+++a+al ++++++++a + 676729508 141 llgsspfilgkrvradedsgggkdetmgsfatpagfwavparpdfgqvwsfaagaPQEMFLQQQQQQQQQPAAALFVHQQQQQQAAM 227 888889999999999999999999999999999999999999999999999987644444445566666666566666655555544 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	3.8E-34	46	202	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.892	46	100	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 264 aa Download sequence Send to blast
MSSTNDGVMI SNGAIMERQR QQQQQQQQQQ QQQSSDGALV VKKPPAKDRH SKVDGRGRRI 60 RMPIICAARV FQLTRELGHK SDGQTIEWLL RQAEPSIIAA TGTGTTPASF STASVSIRGH 120 STTNSTSTNC TLSSSLDHKP LLGSSPFILG KRVRADEDSG GGKDETMGSF ATPAGFWAVP 180 ARPDFGQVWS FAAGAPQEMF LQQQQQQQQQ PAAALFVHQQ QQQQAAMGEA SAARVGNYLP 240 GHLNLLASLS GGAPGSGRRE DDQR

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00524	DAP	Transfer from AT5G23280	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676729508

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP002688	4e-48	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024007014.1	1e-140	transcription factor TCP7
Refseq	XP_024007015.1	1e-140	transcription factor TCP7
Refseq	XP_024007016.1	1e-140	transcription factor TCP7
Refseq	XP_024007017.1	1e-140	transcription factor TCP7
Swissprot	Q9FMX2	1e-118	TCP7_ARATH; Transcription factor TCP7
TrEMBL	A0A1J3ITE1	1e-160	A0A1J3ITE1_NOCCA; Transcription factor TCP7 (Fragment)
STRING	XP_006394596.1	1e-139	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1782	26	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	4e-72	TCP family protein