PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676729458

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

bHLH

Protein Properties

Length: 514aa MW: 57535.7 Da PI: 7.1548

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676729458	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	54.6	1.9e-17	268	317	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h++ E+rRR++iN++f+ Lr+l+P++ ++K +Ka+ L +++eYI+ Lq 676729458 268 RSKHSATEQRRRSKINDRFQMLRQLIPNS----DQKRDKASFLLEVIEYIHFLQ 317 889***********************9....9****************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	5.4E-22	263	323	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.2E-18	264	329	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	16.939	266	316	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.0E-15	268	317	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.20E-15	268	320	No hit	No description
SMART	SM00353	9.6E-14	272	322	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 514 aa Download sequence Send to blast
MERPQSRLFE VQGRKKPTHD FLSAIHPDPM PSSQGGYLKT HDFLQPLERV GTTACTKEEG 60 IRGNVNTTSE LQSPADAQNQ HVLPGGIGTY TISQIPNYLY HNHHQRVPKS EVSPMFTVSQ 120 ASSNERNAVE ETSISNCSSY AANNGFTLWD QSVQKRGHTR KDIAQESANT RADAAGTMRL 180 WQGIEQRSSF SSRSSLQASG VKSQSQSFMD MITSAKGSSQ EDDLDSDNEE FVTKKGNNTS 240 TSQCPRVDLK VKGDRIGHSN EQKPNTPRSK HSATEQRRRS KINDRFQMLR QLIPNSDQKR 300 DKASFLLEVI EYIHFLQEKV DKHEVVPYQG ELMNSTNHQQ PPEGTVPVLA EGQTVDMDHQ 360 QCLNRAMETN SFPVLSHTNS LFSPGSSQLC PVSSSDAAAA MDCEKLREEV EVEELSVHKG 420 TISISSVYSQ GLLKTLTETL QRSGVDLSKS NISVQIKLSK QPQKDEEVHR RVRPRPPSGD 480 ENHNDDENTN IKQIRKQKKF KKTTALETYN GETE

Sequence ? help Back to Top

Protein Sequence Length: 514 aa Download sequence Send to blast

MERPQSRLFE VQGRKKPTHD FLSAIHPDPM PSSQGGYLKT HDFLQPLERV GTTACTKEEG  60
IRGNVNTTSE LQSPADAQNQ HVLPGGIGTY TISQIPNYLY HNHHQRVPKS EVSPMFTVSQ  120
ASSNERNAVE ETSISNCSSY AANNGFTLWD QSVQKRGHTR KDIAQESANT RADAAGTMRL  180
WQGIEQRSSF SSRSSLQASG VKSQSQSFMD MITSAKGSSQ EDDLDSDNEE FVTKKGNNTS  240
TSQCPRVDLK VKGDRIGHSN EQKPNTPRSK HSATEQRRRS KINDRFQMLR QLIPNSDQKR  300
DKASFLLEVI EYIHFLQEKV DKHEVVPYQG ELMNSTNHQQ PPEGTVPVLA EGQTVDMDHQ  360
QCLNRAMETN SFPVLSHTNS LFSPGSSQLC PVSSSDAAAA MDCEKLREEV EVEELSVHKG  420
TISISSVYSQ GLLKTLTETL QRSGVDLSKS NISVQIKLSK QPQKDEEVHR RVRPRPPSGD  480
ENHNDDENTN IKQIRKQKKF KKTTALETYN GETE

Functional Description ? help Back to Top
Source	Description
UniProt	Positive brassinosteroid-signaling protein. Transcription factor that bind specifically to the DNA sequence 5'-CANNTG-3'(E box). Can bind individually to the promoter as a homodimer or synergistically as a heterodimer with BZR2/BES1. Does not itself activate transcription but enhances BZR2/BES1-mediated target gene activation. {ECO:0000269\|PubMed:15680330}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676729458

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by cold treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC149635	2e-33	AC149635.1 Genomic sequence for broccoli [Brassica oleracea L. (Italica group)] BAC clone B19N3, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018438683.1	0.0	PREDICTED: transcription factor BIM1-like isoform X1
Refseq	XP_018438684.1	0.0	PREDICTED: transcription factor BIM1-like isoform X1
Swissprot	Q9LEZ3	1e-129	BIM1_ARATH; Transcription factor BIM1
TrEMBL	A0A1J3I0B8	0.0	A0A1J3I0B8_NOCCA; Transcription factor BIM1
STRING	Bo2g161110.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM18805	7	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08130.4	1e-128	bHLH family protein

Publications ? help Back to Top
Liang T, et al. UVR8 Interacts with BES1 and BIM1 to Regulate Transcription and Photomorphogenesis in Arabidopsis. Dev. Cell, 2018. 44(4): p. 512-523.e5 [PMID:29398622]